Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J0W33_RS09010 Genome accession   NZ_CP071319
Coordinates   1890470..1891960 (-) Length   496 a.a.
NCBI ID   WP_206896624.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN62X4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1885470..1896960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS08985 (J0W33_08985) - 1885915..1886295 (-) 381 WP_206896621.1 hypothetical protein -
  J0W33_RS08990 (J0W33_08990) - 1886399..1886800 (+) 402 WP_005181530.1 MAPEG family protein -
  J0W33_RS08995 (J0W33_08995) ppa 1886918..1887442 (+) 525 WP_005181532.1 inorganic diphosphatase -
  J0W33_RS09000 (J0W33_09000) - 1887548..1888876 (-) 1329 WP_206896622.1 OprD family outer membrane porin -
  J0W33_RS09005 (J0W33_09005) - 1889635..1890396 (+) 762 WP_206896623.1 TorF family putative porin -
  J0W33_RS09010 (J0W33_09010) comM 1890470..1891960 (-) 1491 WP_206896624.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J0W33_RS09015 (J0W33_09015) - 1892030..1892257 (-) 228 WP_168382017.1 accessory factor UbiK family protein -
  J0W33_RS09020 (J0W33_09020) glnK 1892534..1892872 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  J0W33_RS09025 (J0W33_09025) - 1892935..1894338 (+) 1404 WP_075174920.1 ammonium transporter -
  J0W33_RS09030 (J0W33_09030) nrdR 1894478..1894936 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  J0W33_RS09035 (J0W33_09035) ribD 1894960..1896048 (+) 1089 WP_127801553.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54050.98 Da        Isoelectric Point: 7.5671

>NTDB_id=544957 J0W33_RS09010 WP_206896624.1 1890470..1891960(-) (comM) [Acinetobacter indicus strain GXNN62X4]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRSVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=544957 J0W33_RS09010 WP_206896624.1 1890470..1891960(-) (comM) [Acinetobacter indicus strain GXNN62X4]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTGCCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCTCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCTGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Haemophilus influenzae Rd KW20

49.9

100

0.504
  comM Vibrio campbellii strain DS40M4

50.202

100

0.502
  comM Glaesserella parasuis strain SC1401

49.8

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.468