Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JZY07_RS00360 Genome accession   NZ_CP071305
Coordinates   61338..62519 (+) Length   393 a.a.
NCBI ID   WP_004194467.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 56338..67519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00335 (JZY07_00335) ruvA 58254..58844 (+) 591 WP_024399975.1 Holliday junction branch migration protein RuvA -
  JZY07_RS00340 (JZY07_00340) - 58853..59494 (+) 642 WP_024399976.1 hypothetical protein -
  JZY07_RS00345 (JZY07_00345) - 59511..60071 (+) 561 WP_024399977.1 DNA-3-methyladenine glycosylase I -
  JZY07_RS00350 (JZY07_00350) - 60145..60555 (+) 411 WP_024399978.1 helix-turn-helix transcriptional regulator -
  JZY07_RS00355 (JZY07_00355) - 60528..61193 (+) 666 WP_024412038.1 type II CAAX endopeptidase family protein -
  JZY07_RS00360 (JZY07_00360) cinA 61338..62519 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  JZY07_RS00365 (JZY07_00365) recA 62571..63722 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  JZY07_RS00370 (JZY07_00370) spx 63958..64356 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  JZY07_RS00375 (JZY07_00375) - 64456..64722 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  JZY07_RS00380 (JZY07_00380) ruvX 64722..65141 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  JZY07_RS00385 (JZY07_00385) - 65153..65473 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  JZY07_RS00390 (JZY07_00390) - 65731..66309 (+) 579 WP_044667815.1 nucleotidyltransferase family protein -
  JZY07_RS00395 (JZY07_00395) rpsJ 66968..67276 (+) 309 WP_024399980.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43013.95 Da        Isoelectric Point: 4.4112

>NTDB_id=544831 JZY07_RS00360 WP_004194467.1 61338..62519(+) (cinA) [Streptococcus suis strain SC183]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQI
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=544831 JZY07_RS00360 WP_004194467.1 61338..62519(+) (cinA) [Streptococcus suis strain SC183]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTCTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACCTGGTCATTCTCTGTGGAGGATTGGGTCCAACTGAGGATGACTTGACCAAGCAGATC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTATCCTACGTTTTTTTGGCATTGG
TGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATCGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTAAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.929

100

0.959
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus mitis SK321

55.769

100

0.59
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus mitis NCTC 12261

55.529

100

0.588
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Bacillus subtilis subsp. subtilis str. 168

40.665

99.491

0.405