Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J0J35_RS09275 Genome accession   NZ_CP071301
Coordinates   1879550..1879966 (+) Length   138 a.a.
NCBI ID   WP_206918196.1    Uniprot ID   -
Organism   Lactococcus sp. LG606     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1874550..1884966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS09250 (J0J35_09250) guaB 1875381..1876862 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  J0J35_RS09255 (J0J35_09255) rpsU 1876988..1877164 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  J0J35_RS09260 (J0J35_09260) comGA 1877350..1878294 (+) 945 WP_165719887.1 competence type IV pilus ATPase ComGA Machinery gene
  J0J35_RS09265 (J0J35_09265) comGB 1878233..1879251 (+) 1019 Protein_1790 competence type IV pilus assembly protein ComGB -
  J0J35_RS09270 (J0J35_09270) comYC 1879270..1879575 (+) 306 WP_029345656.1 competence type IV pilus major pilin ComGC Machinery gene
  J0J35_RS09275 (J0J35_09275) comGD 1879550..1879966 (+) 417 WP_206918196.1 competence type IV pilus minor pilin ComGD Machinery gene
  J0J35_RS09280 (J0J35_09280) comGE 1879998..1880231 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  J0J35_RS09285 (J0J35_09285) comGF 1880218..1880652 (+) 435 WP_242534013.1 competence type IV pilus minor pilin ComGF -
  J0J35_RS09290 (J0J35_09290) - 1880884..1881729 (+) 846 WP_019291443.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  J0J35_RS09295 (J0J35_09295) - 1881800..1882684 (-) 885 WP_086582775.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15830.44 Da        Isoelectric Point: 9.7745

>NTDB_id=544814 J0J35_RS09275 WP_206918196.1 1879550..1879966(+) (comGD) [Lactococcus sp. LG606]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSEKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=544814 J0J35_RS09275 WP_206918196.1 1879550..1879966(+) (comGD) [Lactococcus sp. LG606]
ATGCAAAACGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGAGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362