Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0J35_RS08205 Genome accession   NZ_CP071301
Coordinates   1666893..1667387 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus sp. LG606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1661893..1672387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS08175 (J0J35_08175) - 1662209..1663390 (+) 1182 WP_206916616.1 MFS transporter -
  J0J35_RS08180 (J0J35_08180) recX 1663514..1664347 (+) 834 WP_206916617.1 recombination regulator RecX -
  J0J35_RS08185 (J0J35_08185) - 1664430..1665278 (+) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  J0J35_RS08190 (J0J35_08190) - 1665310..1665618 (+) 309 WP_019291953.1 DUF960 domain-containing protein -
  J0J35_RS08195 (J0J35_08195) - 1665652..1666419 (-) 768 WP_165707018.1 metallophosphoesterase -
  J0J35_RS08200 (J0J35_08200) rpsR 1666528..1666773 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  J0J35_RS08205 (J0J35_08205) ssb 1666893..1667387 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  J0J35_RS08210 (J0J35_08210) rpsF 1667425..1667718 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  J0J35_RS08215 (J0J35_08215) - 1667904..1668116 (-) 213 WP_019291955.1 hypothetical protein -
  J0J35_RS08220 (J0J35_08220) - 1668584..1670047 (+) 1464 WP_019291956.1 amino acid permease -
  J0J35_RS08225 (J0J35_08225) dnaX 1670079..1671737 (-) 1659 WP_019291957.1 DNA polymerase III subunit gamma/tau -
  J0J35_RS08230 (J0J35_08230) - 1671750..1672370 (-) 621 WP_003133126.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=544809 J0J35_RS08205 WP_017369521.1 1666893..1667387(-) (ssb) [Lactococcus sp. LG606]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=544809 J0J35_RS08205 WP_017369521.1 1666893..1667387(-) (ssb) [Lactococcus sp. LG606]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372