Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J0J35_RS00470 Genome accession   NZ_CP071301
Coordinates   86279..87283 (+) Length   334 a.a.
NCBI ID   WP_206917051.1    Uniprot ID   -
Organism   Lactococcus sp. LG606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 81279..92283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS00450 (J0J35_00450) - 81656..82360 (+) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -
  J0J35_RS00455 (J0J35_00455) - 82417..83241 (-) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  J0J35_RS00460 (J0J35_00460) - 83605..85026 (+) 1422 WP_019292048.1 NCS2 family permease -
  J0J35_RS00465 (J0J35_00465) - 85103..86203 (+) 1101 WP_206917048.1 YdcF family protein -
  J0J35_RS00470 (J0J35_00470) coiA 86279..87283 (+) 1005 WP_206917051.1 competence protein CoiA Machinery gene
  J0J35_RS00475 (J0J35_00475) pepF 87267..89072 (+) 1806 WP_206917068.1 oligoendopeptidase F Regulator
  J0J35_RS00480 (J0J35_00480) - 89072..89755 (+) 684 WP_198494871.1 O-methyltransferase -
  J0J35_RS00485 (J0J35_00485) - 89853..90761 (+) 909 WP_206917071.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39825.68 Da        Isoelectric Point: 8.6076

>NTDB_id=544789 J0J35_RS00470 WP_206917051.1 86279..87283(+) (coiA) [Lactococcus sp. LG606]
MLIALDKDGKTINLLDNSSISGPFYCPACKSPLRLKKGKIKIPHFAHISVKNCDSWSENESAQHLGLKLSLYQWFKKKEK
VELEKYVPEMKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKNNLSSLQKNLLYYSAVRGF
YFWELDWNRKKLRLKSLVYQDLKGRPIYLTEEFDFFQENLLELLRQPFREGEDLSLDAPKQEELQLFVQKQLYYQVPKWL
KMQEKYYEQGKNLLDLNWNKSYWSPPGLNLLTFDFSDDTPESFFQVDTPLEKYYHSFYESFQLQEHEKLHTPSFYAIIKD
KNKVKNGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=544789 J0J35_RS00470 WP_206917051.1 86279..87283(+) (coiA) [Lactococcus sp. LG606]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTCCTTGACAATTCTTCAATTAGTGGCCCTTTTTATTGCCC
AGCCTGTAAGTCGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCTCACATATCCGTAAAAAATTGTG
ACTCTTGGAGCGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGTTTGTATCAATGGTTTAAGAAAAAAGAGAAA
GTTGAGTTGGAAAAGTATGTGCCAGAAATGAAGCAAACGGCTGATTTGTTAGTAAATGATAAACTTGCTATTGAAATACA
GTGTTCGCCGCTTTCTTTGCAACGTTTAGAAGAGAGAACGGTAAGTTACAAAGAAAAAGGATATTATGTCCTTTGGCTTC
AAGGAAGGGACTTATGGCTTAAGAATAACCTATCATCTTTGCAGAAAAATTTGCTCTATTATTCAGCAGTGAGAGGTTTT
TATTTTTGGGAATTAGACTGGAACAGAAAAAAACTACGGTTGAAATCATTGGTTTATCAAGATTTGAAAGGACGACCGAT
TTATCTTACTGAAGAGTTTGACTTCTTTCAAGAGAATCTCTTAGAGCTCTTACGCCAACCCTTTCGAGAAGGAGAAGATC
TTAGTTTAGATGCTCCAAAACAGGAAGAGTTACAGTTGTTTGTTCAGAAACAACTGTATTATCAAGTGCCAAAATGGCTT
AAAATGCAAGAAAAATATTATGAACAAGGAAAAAATTTGCTAGACCTCAATTGGAATAAGAGCTACTGGAGTCCTCCAGG
CTTAAACTTATTGACCTTTGACTTTTCCGATGATACGCCAGAAAGCTTTTTTCAAGTAGATACTCCCTTGGAAAAATATT
ATCACAGCTTCTATGAAAGTTTTCAGTTACAAGAACACGAAAAACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.524

98.204

0.506
  coiA Streptococcus pneumoniae Rx1

40.244

98.204

0.395
  coiA Streptococcus pneumoniae D39

40.244

98.204

0.395
  coiA Streptococcus pneumoniae R6

40.244

98.204

0.395
  coiA Streptococcus pneumoniae TIGR4

40.244

98.204

0.395
  coiA Streptococcus mitis NCTC 12261

39.329

98.204

0.386