Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J0J35_RS00475 Genome accession   NZ_CP071301
Coordinates   87267..89072 (+) Length   601 a.a.
NCBI ID   WP_206917068.1    Uniprot ID   -
Organism   Lactococcus sp. LG606     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 82267..94072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS00455 (J0J35_00455) - 82417..83241 (-) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  J0J35_RS00460 (J0J35_00460) - 83605..85026 (+) 1422 WP_019292048.1 NCS2 family permease -
  J0J35_RS00465 (J0J35_00465) - 85103..86203 (+) 1101 WP_206917048.1 YdcF family protein -
  J0J35_RS00470 (J0J35_00470) coiA 86279..87283 (+) 1005 WP_206917051.1 competence protein CoiA Machinery gene
  J0J35_RS00475 (J0J35_00475) pepF 87267..89072 (+) 1806 WP_206917068.1 oligoendopeptidase F Regulator
  J0J35_RS00480 (J0J35_00480) - 89072..89755 (+) 684 WP_198494871.1 O-methyltransferase -
  J0J35_RS00485 (J0J35_00485) - 89853..90761 (+) 909 WP_206917071.1 peptidyl-prolyl cis-trans isomerase -
  J0J35_RS00490 (J0J35_00490) alaS 91011..93629 (+) 2619 WP_206917072.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69688.23 Da        Isoelectric Point: 4.7537

>NTDB_id=544790 J0J35_RS00475 WP_206917068.1 87267..89072(+) (pepF) [Lactococcus sp. LG606]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGTVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFDRLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKAEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAEAIVNGGPDAREKYLTYLKVGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=544790 J0J35_RS00475 WP_206917068.1 87267..89072(+) (pepF) [Lactococcus sp. LG606]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGACGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGACCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCGAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAAGCAGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCGAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTCATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGATTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTACGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGATTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGCCCAGACGCGCGTGAAAAATACCTCACTTATCTCAAAGTAGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.725

100

0.647