Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ANA_RS17895 Genome accession   NC_019427
Coordinates   4097331..4097702 (+) Length   123 a.a.
NCBI ID   WP_015081426.1    Uniprot ID   -
Organism   Anabaena sp. 90     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4092331..4102702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANA_RS17880 (ANA_C13633) - 4092774..4093784 (+) 1011 WP_015081423.1 serine/threonine-protein kinase -
  ANA_RS17885 (ANA_C13634) tilS 4093781..4094782 (+) 1002 WP_015081424.1 tRNA lysidine(34) synthetase TilS -
  ANA_RS17890 (ANA_C13635) hmpF 4095049..4096797 (-) 1749 WP_015081425.1 pilus motility taxis protein HmpF -
  ANA_RS24880 (ANA_C13636) - 4096920..4097143 (+) 224 Protein_3808 response regulator -
  ANA_RS17895 (ANA_C13637) pilH 4097331..4097702 (+) 372 WP_015081426.1 response regulator transcription factor Machinery gene
  ANA_RS17900 (ANA_C13638) - 4097710..4098243 (+) 534 WP_015081427.1 chemotaxis protein CheW -
  ANA_RS17905 (ANA_C13639) - 4098260..4101049 (+) 2790 WP_015081428.1 methyl-accepting chemotaxis protein -
  ANA_RS26145 - 4101041..4101190 (-) 150 WP_174783505.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13617.83 Da        Isoelectric Point: 5.1871

>NTDB_id=54443 ANA_RS17895 WP_015081426.1 4097331..4097702(+) (pilH) [Anabaena sp. 90]
MSTILIVEDSIVQREMMTDLLKASGLEVTHASDGAEALEAIHKAPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPIELVGTVKQLLRGQG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=54443 ANA_RS17895 WP_015081426.1 4097331..4097702(+) (pilH) [Anabaena sp. 90]
ATGAGCACAATTCTAATTGTTGAGGACAGTATCGTCCAAAGAGAGATGATGACAGACCTTCTGAAAGCTAGTGGCTTAGA
AGTTACTCATGCAAGCGATGGCGCAGAAGCTTTAGAAGCCATTCACAAAGCACCTCCCGATTTGGTGGTTTTGGATATTG
TCATGCCCCGCATGAATGGCTATGAACTCTGTCGGCGCTTAAAATCTGATCCTAAAACCCAAAATGTTCCTGTAGTCATG
TGTTCTTCTAAAGGTGAAGAATTCGATCGCTATTGGGGGATGAAACAAGGGGCAGATGCCTATATAGCTAAACCCTTTCA
ACCAATCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGACAAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

73.554

98.374

0.724
  micA Streptococcus pneumoniae Cp1015

39.167

97.561

0.382
  pilG Acinetobacter baumannii strain A118

41.228

92.683

0.382
  vicR Streptococcus mutans UA159

37.5

97.561

0.366
  pilL-C Synechocystis sp. PCC 6803

37.19

98.374

0.366

Multiple sequence alignment