Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPB19_RS05750 Genome accession   NZ_CP071247
Coordinates   1274325..1275854 (+) Length   509 a.a.
NCBI ID   WP_206645704.1    Uniprot ID   -
Organism   Marinobacter salinisoli strain LPB0319     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1269325..1280854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB19_RS05725 (LPB19_05725) speE 1270673..1271554 (+) 882 WP_206645139.1 polyamine aminopropyltransferase -
  LPB19_RS05730 (LPB19_05730) - 1271655..1271849 (+) 195 WP_206645140.1 DUF6316 family protein -
  LPB19_RS05735 (LPB19_05735) - 1271928..1273211 (-) 1284 WP_206645141.1 ammonium transporter -
  LPB19_RS05740 (LPB19_05740) glnK 1273279..1273617 (-) 339 WP_004578958.1 P-II family nitrogen regulator -
  LPB19_RS05745 (LPB19_05745) - 1274001..1274255 (+) 255 WP_206645142.1 accessory factor UbiK family protein -
  LPB19_RS05750 (LPB19_05750) comM 1274325..1275854 (+) 1530 WP_206645704.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB19_RS05755 (LPB19_05755) trmB 1275928..1276662 (+) 735 WP_206645143.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LPB19_RS05760 (LPB19_05760) - 1276673..1277179 (-) 507 WP_228289225.1 hypothetical protein -
  LPB19_RS05765 (LPB19_05765) hemW 1277206..1278354 (-) 1149 WP_206645145.1 radical SAM family heme chaperone HemW -
  LPB19_RS05770 (LPB19_05770) rdgB 1278359..1278958 (-) 600 WP_206645146.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  LPB19_RS05775 (LPB19_05775) - 1278967..1279431 (-) 465 WP_206645147.1 DUF4426 domain-containing protein -
  LPB19_RS05780 (LPB19_05780) metW 1279428..1280033 (-) 606 WP_206645148.1 methionine biosynthesis protein MetW -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 53703.86 Da        Isoelectric Point: 7.1031

>NTDB_id=544249 LPB19_RS05750 WP_206645704.1 1274325..1275854(+) (comM) [Marinobacter salinisoli strain LPB0319]
MLAIVHSRASVGVVAPSVTVEVHLSGGLPALSIVGMPETAVRESRERVRSALLNAGFEFPARRITINLAPADLPKEGARF
DLPIAIGILAASGQLPSEPLERLEFVGELSLDGALRALSGVLPAAVAATEAGRAIMVPLANALEASLVSEGEVLAAGHLL
EVCGHITGQSKLGPVPPAPVAPGQAPVETPDLADVRGQHVPRRALEVAAAGQHNLLFFGPPGTGKSMLASRLPGLLPCLH
TSAALEVAAIHSVSGHPVPPEQWRLPPFRAPHHTASAVAMVGGGSNPRPGEISLAHGGVLFLDELPEFERKVLEVLREPM
ESGVIAISRAARQVIFPARFQLVGAMNPCPCGFLGHPTRECQCSAQQVLRYRARVSGPLLDRFDMHVEVPVQSADVLLHS
GAPGECSAVVRERVLQARERQDHRGGINAMLTGRALQEACGLDSANEQMLTGAMNRLGLSARALHRILRVARTLADLDDA
ATLSQCHLAEALGYRQLDRQQPNRSPVSS

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=544249 LPB19_RS05750 WP_206645704.1 1274325..1275854(+) (comM) [Marinobacter salinisoli strain LPB0319]
ATGCTTGCGATTGTCCATTCCCGCGCCAGTGTCGGCGTGGTTGCCCCCAGTGTCACCGTCGAGGTCCACCTCTCCGGAGG
TCTGCCTGCGCTGTCCATCGTCGGAATGCCGGAAACCGCGGTCCGCGAGAGCCGGGAACGGGTGCGTAGCGCTCTGCTGA
ATGCCGGTTTCGAATTCCCTGCCCGTCGCATCACCATCAATCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGCACGATTC
GATCTTCCCATTGCTATCGGCATTCTGGCGGCGTCCGGTCAGTTACCGAGCGAACCGCTGGAGCGTCTCGAGTTCGTAGG
TGAACTGTCGCTCGATGGCGCGTTGCGTGCCCTGAGTGGTGTATTGCCCGCCGCTGTCGCCGCCACCGAGGCGGGCCGGG
CCATTATGGTGCCTTTGGCGAACGCGCTGGAAGCATCCCTGGTCAGTGAGGGAGAGGTATTGGCCGCCGGCCACCTGTTG
GAGGTTTGCGGGCATATCACGGGACAATCAAAGCTCGGTCCGGTCCCGCCTGCACCGGTTGCACCCGGGCAAGCACCGGT
CGAAACTCCGGACCTGGCCGATGTGCGGGGGCAGCACGTGCCCCGAAGGGCGCTCGAGGTAGCGGCAGCGGGCCAGCACA
ATCTGCTCTTTTTCGGGCCTCCGGGTACCGGCAAGAGTATGCTCGCAAGCCGGCTACCGGGGCTTCTGCCATGCTTGCAC
ACGTCTGCCGCGCTGGAGGTGGCGGCCATTCACTCTGTGTCGGGGCACCCGGTGCCACCCGAGCAGTGGCGATTGCCGCC
TTTTCGAGCCCCTCACCACACGGCGTCTGCGGTTGCCATGGTGGGGGGCGGCAGCAACCCGCGGCCGGGGGAAATCTCTC
TGGCCCATGGTGGCGTACTGTTTCTCGACGAGTTGCCTGAATTTGAGCGCAAGGTATTGGAGGTACTCCGCGAGCCCATG
GAGTCGGGAGTCATCGCCATCAGCCGTGCAGCGCGTCAGGTGATTTTTCCAGCCCGGTTTCAGCTGGTCGGTGCCATGAA
TCCATGCCCCTGTGGTTTTCTGGGGCATCCGACACGGGAGTGTCAGTGTTCTGCGCAGCAGGTGCTTCGATACCGCGCCA
GGGTGTCGGGCCCTTTGCTGGATCGGTTCGATATGCATGTGGAGGTGCCGGTTCAGTCTGCCGATGTTCTGTTACACAGT
GGCGCCCCGGGTGAGTGCAGTGCCGTGGTGCGCGAGCGGGTGCTGCAGGCCCGGGAGCGGCAGGATCATCGGGGCGGCAT
CAACGCGATGCTCACCGGCCGAGCGTTGCAGGAAGCGTGCGGGCTGGATTCGGCGAACGAGCAGATGCTGACGGGCGCGA
TGAACCGGTTGGGGTTGTCCGCCCGGGCATTGCATCGGATCTTGCGCGTTGCGCGAACGCTGGCGGATCTGGACGATGCG
GCCACACTGAGCCAGTGCCACCTGGCAGAAGCTCTGGGCTATCGTCAGCTGGATCGCCAGCAGCCAAACCGCTCGCCGGT
GTCCTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

98.035

0.55
  comM Haemophilus influenzae Rd KW20

55.467

98.821

0.548
  comM Glaesserella parasuis strain SC1401

54.724

99.804

0.546
  comM Vibrio campbellii strain DS40M4

54.672

98.821

0.54
  comM Legionella pneumophila str. Paris

48.996

97.839

0.479
  comM Legionella pneumophila strain ERS1305867

48.996

97.839

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.383

100

0.454