Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMAD1_RS19870 Genome accession   NC_019393
Coordinates   4526292..4527806 (+) Length   504 a.a.
NCBI ID   WP_041702925.1    Uniprot ID   -
Organism   Alteromonas mediterranea DE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4521292..4532806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMAD1_RS19855 (amad1_19955) ilvA 4521594..4523141 (-) 1548 WP_012518728.1 threonine ammonia-lyase, biosynthetic -
  AMAD1_RS19860 (amad1_19960) ilvD 4523141..4524991 (-) 1851 WP_012518727.1 dihydroxy-acid dehydratase -
  AMAD1_RS19865 (amad1_19965) - 4525420..4526037 (+) 618 WP_012518726.1 trimeric intracellular cation channel family protein -
  AMAD1_RS19870 (amad1_19970) comM 4526292..4527806 (+) 1515 WP_041702925.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMAD1_RS19875 (amad1_19975) ilvY 4527844..4528716 (-) 873 WP_012518724.1 HTH-type transcriptional activator IlvY -
  AMAD1_RS19880 (amad1_19980) ilvC 4528874..4530352 (+) 1479 WP_012518723.1 ketol-acid reductoisomerase -
  AMAD1_RS19885 (amad1_19985) - 4530501..4531751 (-) 1251 WP_012518722.1 multidrug effflux MFS transporter -
  AMAD1_RS19890 (amad1_19990) - 4531892..4532146 (-) 255 Protein_3929 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54131.72 Da        Isoelectric Point: 6.0845

>NTDB_id=54388 AMAD1_RS19870 WP_041702925.1 4526292..4527806(+) (comM) [Alteromonas mediterranea DE1]
MGMAVVKTFAGQGVTAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDTSLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKKLAKGQPFASHSPNTVQTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGETLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANMPN
DSLFDTRQQVIEARHKQQARQGKPNGALHAGELADICLLDDADLRFLQAAAKQLNLSMRVFHRTLKVARTIADLEGSQGV
LRAHIAEALGYRALDNLIKQLSAN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=54388 AMAD1_RS19870 WP_041702925.1 4526292..4527806(+) (comM) [Alteromonas mediterranea DE1]
ATGGGCATGGCTGTGGTTAAAACTTTTGCAGGCCAAGGCGTTACTGCGCCAGAGGTGAGCGTAGAAATTCATTTGGCTAA
CGGCTTACCCGCCTTTCAACTAGTGGGCATGGCTGAAACCAGTGTAAAGGAAGCCCGTGAGCGTGTGCGCAGCGCCCTTA
TCAACAGTGGCTTTGAATTTCCTGCCAAACGAATAACCGTTAACTTAGCTCCCGCTGATATTCCTAAGTTCGGCGGGCGA
TTCGACCTTCCCATCGCCGTAGGTATACTCGCCGCTTCCGGCTATATTTCAGATACAAGCTTATTAAATATTGCCTTTGT
GGGCGAGCTTGCTTTAAACGGAGAAATAAAGCCGGTTAACGGCCTTATTCCCGTCGTAATGACAGCCGCAAACGAAGATA
TTGCTTTGGTTTACCCTGGTGACAATGACGTTGAAGCCGCACTCGTATCCCACGCTACGCGCTTTCCCGCGTTTGATTTA
CTGTCTGTTTATGAACACCTTACTGGTAATAAGAAATTGGCAAAGGGGCAGCCTTTTGCTTCACATTCGCCTAATACGGT
ACAAACAGGTTGGGATGATATTATCGGGCAGGAACAGGCTAAACGGGCGTTAATCATCGCCGCTAGTGGTGCGCATAATC
TACTAATGGTGGGGCCTCCCGGCACGGGAAAGAGCCTGCTAGCTAGCCGTATGCTCTCGCTACTACCAGATATGAGCGAA
GAAGAGGCCCTTGAAGTAGCCGCCATTCATTCGGTAAAAGGTGAAACCTTACACGCCGAGCGCTTTTTAACGCGTCATTT
GCGCTCCCCCCATCATACCAGTTCTGCTGTGGCGCTTACTGGTGGCGGTTCTAACCCGGTGCCGGGCGAAATATCGCTGG
CCCATAACGGTATTTTGTTTTTAGACGAATTGCCTGAATTCGGACGCAAAGCGCTGGACGTATTGCGTGAGCCCCTTGAA
ACTGGCGATGTACACTTGTCGAGAGCTTCAGGAAGCGCTACGTACCCGGCTAATTTTCAGTTAGTAGCAGCGATGAACCC
AAGCCCGACGGGTGATATTGATGATAATCGTCTGACACCACAGCAGCAGCTTAACTACTTAAATCGCCTCTCTGGGCCGC
TTCTCGATAGAATAGACATCCAGGTAGAAGTGCCCCGTTTGCCCGACTACGACCTGCCAGAACGGGCCAATATGCCTAAC
GATTCATTATTTGACACCCGCCAACAGGTTATTGAAGCAAGGCATAAACAACAAGCGCGCCAAGGTAAACCTAACGGTGC
GCTGCATGCGGGCGAGCTTGCCGATATTTGCCTACTTGATGATGCAGACTTACGCTTTTTACAGGCAGCCGCGAAACAGC
TGAATTTATCCATGCGTGTGTTTCACCGCACGCTAAAGGTGGCCAGAACCATTGCCGATCTGGAAGGGTCACAGGGCGTA
CTTCGCGCTCATATCGCTGAAGCGTTAGGCTATCGCGCATTAGACAATTTGATAAAACAACTTAGTGCTAATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.755

100

0.54
  comM Vibrio campbellii strain DS40M4

52.964

100

0.532
  comM Haemophilus influenzae Rd KW20

50.98

100

0.516
  comM Glaesserella parasuis strain SC1401

51.186

100

0.514
  comM Legionella pneumophila str. Paris

46.169

98.413

0.454
  comM Legionella pneumophila strain ERS1305867

46.169

98.413

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.012

100

0.423

Multiple sequence alignment