Detailed information NTG0054385

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SRA_RS01755
• Genome accession: NZ_AJTZ01000004
• Coordinates: 23360..24361 (-)
• Length: 333 a.a.
• NCBI ID: WP_003086929.1
• Uniprot ID: A0ABN0GWD6
• Organism: Streptococcus ratti FA-1 = DSM 20564 strain FA-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 18360..29361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SRA_RS01735 (SRA_01789)	thrC	18546..20030 (-)	1485	WP_003086918.1	threonine synthase	-
SRA_RS01740 (SRA_01799)	-	20679..22463 (-)	1785	WP_003086923.1	acyltransferase family protein	-
SRA_RS01745 (SRA_01804)	-	22460..22840 (-)	381	WP_003090541.1	hypothetical protein	-
SRA_RS01750 (SRA_01809)	-	22907..23329 (-)	423	WP_003086927.1	low molecular weight protein-tyrosine-phosphatase	-
SRA_RS01755 (SRA_01814)	ruvB	23360..24361 (-)	1002	WP_003086929.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SRA_RS01760 (SRA_01824)	comR	24706..25620 (-)	915	WP_003090542.1	helix-turn-helix domain-containing protein	Regulator
SRA_RS01765 (SRA_01829)	purB	25761..27059 (-)	1299	WP_003086936.1	adenylosuccinate lyase	-
SRA_RS01770 (SRA_01834)	-	27063..27860 (-)	798	WP_225310761.1	hypothetical protein	-
SRA_RS10510	-	27883..27936 (-)	54	WP_162129578.1	hypothetical protein	-
SRA_RS01775 (SRA_01839)	-	27938..28339 (-)	402	WP_003086941.1	SRPBCC family protein	-
SRA_RS01780 (SRA_01844)	-	28372..28983 (-)	612	WP_003086942.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37563.96 Da
• Isoelectric Point: 4.4669

>NTDB_id=54385 SRA_RS01755 WP_003086929.1 23360..24361(-) (ruvB) [Streptococcus ratti FA-1 = DSM 20564 strain FA-1]
MTRILDNELMGDEEFAERTLRPQYLQEYIGQDKVKAQLKIFIEAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNELEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTETDLTEIVERTADIFEMEITHQASLELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYIDQKILKTMIEMYQGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFMMRTRSGRVATAK
AYEHLGYDYIEDN

Nucleotide

• Length: 1002 bp

>NTDB_id=54385 SRA_RS01755 WP_003086929.1 23360..24361(-) (ruvB) [Streptococcus ratti FA-1 = DSM 20564 strain FA-1]
ATGACTAGAATTTTAGATAATGAGCTTATGGGCGACGAAGAGTTTGCGGAACGAACTCTGCGCCCGCAGTATTTACAGGA
ATATATTGGTCAAGATAAGGTAAAGGCTCAGCTGAAGATTTTTATTGAGGCTGCCAAACAGCGCGATGAGGCGCTGGATC
ATGTGCTGCTCTTTGGCCCTCCGGGGCTCGGCAAGACTACCATGGCTTTTGTTATCGCTAATGAATTGGGTGTCAATCTC
AAGCAAACAAGCGGACCGGCTATTGAGAAGGCTGGCGATTTGGTAGCTGTCCTCAATGAATTAGAACCTGGTGACGTGCT
TTTTATTGATGAAATTCACCGAATGCCGATGGCTGTTGAAGAAGTGCTGTATTCGGCCATGGAGGATTTTTACATTGACA
TTATGATTGGTGCTGGGGAGACCTCTCGCAGCGTACATCTTGACTTGCCGCCTTTCACGCTGATTGGTGCAACAACACGT
GCCGGTATGCTCTCTAATCCTTTGCGGGCGCGCTTTGGTATTACAGGGCACATGGAATACTATACAGAAACTGACCTAAC
AGAGATTGTAGAGCGAACGGCGGATATTTTTGAGATGGAAATTACCCATCAGGCTTCTCTGGAATTGGCTAGACGCTCCC
GCGGGACTCCGCGTATTGCTAACCGTCTCTTAAAGCGCGTGCGTGATTACGCTCAGATTATGGGAGATGGTCTGATTGAT
GATAAAATAACGGATAAGGCTCTGACTATGCTTGATGTGGATCATGAAGGACTGGATTATATTGACCAGAAGATTCTTAA
AACAATGATTGAAATGTATCAGGGCGGGCCTGTCGGTCTGGGAACGCTGTCGGTCAATATTGCCGAAGAGCGGGAAACCG
TTGAAGATATGTATGAACCCTATCTCATTCAAAAGGGGTTTATGATGAGAACTCGCAGCGGCCGTGTGGCAACAGCTAAA
GCCTATGAGCACTTGGGCTATGATTATATAGAAGATAACTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	90.634	99.399	0.901
ruvB	Streptococcus pneumoniae D39	90.634	99.399	0.901
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.681	96.997	0.589
ruvB	Helicobacter pylori 26695	50.155	96.997	0.486
ruvB	Synechocystis sp. PCC 6803	50.16	93.994	0.471