Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0F89_RS22065 Genome accession   NZ_CP071200
Coordinates   4611406..4611936 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S96_jyu2015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4606406..4616936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0F89_RS22030 (J0F89_22030) - 4606780..4607187 (-) 408 WP_033639279.1 VOC family protein -
  J0F89_RS22035 (J0F89_22035) - 4607235..4607903 (-) 669 WP_016930257.1 glutathione S-transferase -
  J0F89_RS22040 (J0F89_22040) - 4607900..4608343 (-) 444 WP_033639278.1 lipocalin-like domain-containing protein -
  J0F89_RS22045 (J0F89_22045) - 4608539..4608799 (+) 261 WP_033639277.1 YdgH/BhsA/McbA-like domain containing protein -
  J0F89_RS22050 (J0F89_22050) - 4608949..4609698 (+) 750 WP_033639276.1 3-oxoacyl-ACP reductase family protein -
  J0F89_RS22055 (J0F89_22055) - 4609930..4610142 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  J0F89_RS22060 (J0F89_22060) - 4610364..4611320 (+) 957 WP_015379212.1 cyclase family protein -
  J0F89_RS22065 (J0F89_22065) ssb 4611406..4611936 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J0F89_RS22070 (J0F89_22070) uvrA 4612214..4615042 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  J0F89_RS22075 (J0F89_22075) - 4615272..4616324 (+) 1053 WP_033639275.1 NAD(P)-dependent alcohol dehydrogenase -
  J0F89_RS22080 (J0F89_22080) maa 4616356..4616913 (-) 558 WP_016930262.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=543726 J0F89_RS22065 WP_004936793.1 4611406..4611936(-) (ssb) [Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S96_jyu2015]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=543726 J0F89_RS22065 WP_004936793.1 4611406..4611936(-) (ssb) [Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S96_jyu2015]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364