Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SCAZ3_RS08840 Genome accession   NZ_AIDX01000001
Coordinates   1814742..1817966 (+) Length   1074 a.a.
NCBI ID   WP_003047933.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809742..1822966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS12315 - 1811927..1812219 (-) 293 Protein_1722 integrase core domain-containing protein -
  SCAZ3_RS11480 - 1812163..1812374 (+) 212 Protein_1723 IS3 family transposase -
  SCAZ3_RS08825 (SCAZ3_04435) - 1812499..1812876 (+) 378 WP_003047922.1 OsmC family protein -
  SCAZ3_RS11865 - 1812869..1813291 (+) 423 Protein_1725 DUF1722 domain-containing protein -
  SCAZ3_RS08835 - 1813662..1814566 (-) 905 Protein_1726 neutral zinc metallopeptidase -
  SCAZ3_RS08840 (SCAZ3_04465) rexB 1814742..1817966 (+) 3225 WP_003047933.1 ATP-dependent nuclease subunit B Machinery gene
  SCAZ3_RS08845 (SCAZ3_04470) rexA 1817963..1821595 (+) 3633 WP_003047936.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SCAZ3_RS08850 (SCAZ3_04475) - 1821734..1822849 (+) 1116 WP_003047939.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123196.27 Da        Isoelectric Point: 6.0086

>NTDB_id=54369 SCAZ3_RS08840 WP_003047933.1 1814742..1817966(+) (rexB) [Streptococcus canis FSL Z3-227]
MKLIYTEMAYSMTEILVAEARQAARQGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTFTSSRPKQH
LDDMSLAMIFYRALMTLGPEELSVYGRLKDDHAFVKQLVDLYKELQTAHISVYELTDLDTPEKQGDLIKIISLAEHIMAQ
QDYNQDTSLMTFARAIEAGLLNDQLANTVIIIDGFSRFSAEEEYLLSLLNDTCQAVVIGSYISQKAYQKSFIKGNIYEAS
RHFLQDLAQKYQTKPVFAVSEQTFAPAFSRLTQLVEANHDFSQLDWQLQEEDKASIHLWQSPHQKEEIEHVAKAIREKLY
QGYRYKDILVLLGDVEAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSLRYNWRREDILNLLKSGLFGTFTD
QDIDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNVIREAVFSPLQTLFKSQKQLGASLIDKLMAFFKVIQLSENM
KNLGQSQLEIEKNEEVWKTFSDSLTSCYQIFGQEKLKLADCLALIKMGMQSAHYRVVPATLDVVSVKSYDLVQPHSKPFV
YAIGLTQSHFPKQVTTTGLLSDQERVRVNESLNSYQHFDIASAENSQKNHQTALSLFNAATKELVLSVPTVVNELSDDLS
PYLKELMALGFPLLDKGKNCLSYAASDIGNYKALLSRVIDINRQAILADMTDQDKTFWTVALRYLKRRLREKQLTLPTQD
NHLATKPLTPQVIEARFPSDRPLNLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMKDQTAES
FDNKLTQAIHHTNQEHLFQQVYQNNAEARYSLDLLEDIAKSTASILRLSQNVKVISQEKSFELNVTDQVLVHGVIDRIDQ
LDDGSLGVVDYKSSASQFDIGTFYNGLSSQLITYLAVLQQQFEPADQEHLFGAMYLHLQDPKMDLSAFKTLDDKLVESLY
KALTYKGIFLENEKEHLATGAYQIRNALYSVDELQTLLAYNNHLYLKAAEHIKKGHFLINPYTSDGKSVQGDQLKAITRF
EADLDLGQARRLLTLPARNKRDNFLSLMREEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=54369 SCAZ3_RS08840 WP_003047933.1 1814742..1817966(+) (rexB) [Streptococcus canis FSL Z3-227]
ATGAAACTAATTTACACAGAGATGGCCTACTCAATGACAGAGATTTTGGTAGCTGAGGCAAGGCAGGCTGCTCGTCAGGG
TTATCGCGTATTTTATCTTGCGCCCAATTCCCTCTCCTTTGAAAAAGAAAGAGAGGTGCTGACTCTCTTACCTGAACGAG
GCTCTTTTTCAATCACAGTCACACGATTTGCTCAGATGGCTCGGTACTTTACTTTTACGAGTTCTCGTCCAAAACAGCAT
TTGGATGATATGTCTCTGGCCATGATTTTTTATCGTGCCTTGATGACGTTAGGTCCTGAAGAACTGTCTGTTTATGGTCG
GTTAAAAGATGACCATGCTTTTGTTAAGCAGTTGGTTGACTTGTATAAGGAATTACAAACTGCTCATATAAGTGTTTATG
AGTTAACTGATTTAGACACGCCAGAAAAGCAAGGAGACTTGATCAAGATAATCAGTCTTGCTGAGCATATCATGGCTCAA
CAAGATTACAACCAAGACACCTCTTTGATGACCTTTGCGAGGGCAATTGAAGCTGGTCTATTGAATGACCAATTGGCAAA
CACCGTTATTATCATTGATGGTTTTTCACGTTTTTCTGCTGAAGAAGAGTATCTCTTGTCTTTGTTAAATGATACCTGCC
AGGCAGTTGTGATTGGCAGTTACATTAGCCAAAAAGCCTACCAGAAATCCTTTATCAAAGGAAATATTTATGAAGCAAGT
CGTCACTTTTTACAAGACCTTGCTCAGAAGTACCAGACTAAGCCCGTATTTGCTGTTTCTGAACAAACCTTTGCTCCAGC
CTTTTCAAGGTTAACTCAATTAGTGGAAGCCAATCATGATTTTTCCCAACTGGATTGGCAGTTGCAGGAGGAAGATAAGG
CATCTATTCATCTTTGGCAAAGCCCTCACCAAAAAGAAGAAATAGAACACGTGGCCAAGGCCATTCGTGAAAAACTCTAC
CAAGGGTATCGCTATAAGGATATTTTAGTTCTGTTAGGAGATGTCGAAGCCTATCAGTTGCAAATTGGTCCTATCTTTGA
CAAGTTTGAGATTCCTTATTATTTAGGAAAAGCAGAGCCTATGACTGCCCATCCTTTGGTTCAGTTTATAGAATCTCTTG
AGCGAAGTTTGCGCTATAATTGGCGCCGTGAGGACATTTTAAATTTACTAAAATCAGGTCTTTTTGGAACCTTTACAGAC
CAAGACATTGATCGGTTTGAAGAATACCTTCAGTTTGCAGATATTAAAGGGTTCACCAAATTTTCAAGACCTTTTACCAT
AAATTCCTCTCGTCATTACCCACTGGAGCTGTTAAACGTGATAAGAGAGGCGGTCTTTTCTCCGTTACAAACGTTATTTA
AAAGTCAAAAGCAACTTGGAGCTTCTTTGATAGACAAGCTCATGGCTTTTTTTAAGGTTATTCAACTGTCTGAAAATATG
AAAAATTTGGGACAAAGTCAGCTAGAAATAGAAAAAAATGAAGAAGTTTGGAAAACATTTTCAGACAGTTTAACCTCTTG
TTATCAGATTTTCGGGCAGGAAAAATTAAAGTTGGCAGACTGTTTAGCACTTATCAAAATGGGAATGCAATCCGCCCATT
ATCGGGTTGTACCAGCGACCTTGGATGTCGTATCGGTAAAATCTTATGATCTGGTTCAGCCTCATTCAAAACCCTTTGTC
TATGCCATCGGTCTTACCCAATCTCACTTTCCAAAACAAGTGACAACAACGGGGCTTCTGTCAGATCAAGAACGTGTCAG
GGTAAATGAAAGCTTGAACAGTTACCAACATTTTGATATTGCCAGTGCGGAAAATAGCCAGAAAAATCACCAAACTGCTC
TATCTCTGTTTAATGCTGCTACTAAAGAATTGGTTCTTAGCGTGCCAACAGTGGTCAATGAACTGTCAGACGACCTCTCT
CCTTACCTCAAGGAATTGATGGCGCTTGGATTTCCTCTTTTGGATAAAGGAAAAAATTGCTTATCCTATGCTGCCAGTGA
TATTGGCAATTACAAGGCCCTTTTATCACGTGTTATTGATATTAATCGTCAGGCCATACTAGCTGATATGACGGATCAAG
ACAAGACTTTTTGGACGGTTGCCTTGCGTTACTTGAAACGACGATTAAGGGAAAAGCAGTTAACCCTTCCAACTCAAGAT
AATCACTTGGCAACAAAACCCTTGACTCCCCAAGTCATTGAAGCTCGATTTCCAAGTGATCGTCCTTTAAATCTATCTTC
GACTGCCTTGACGGTCTTTTATAATAACCAGTACAAGTATTTTCTACAATATGTTTTGGGCTTGCAAGAAGCTGAATCCA
TCCATCCTGATGCCAGAATTCATGGTCAATATTTACACCGCGTGTTTGAATTAGTCATGAAAGATCAGACAGCAGAATCC
TTTGACAATAAATTGACCCAAGCCATTCATCACACCAATCAGGAGCATCTTTTTCAGCAGGTTTATCAAAATAACGCTGA
AGCGAGGTACAGTTTAGACCTACTAGAAGATATTGCCAAGTCAACTGCCTCTATTTTACGACTTAGCCAAAATGTCAAGG
TTATTAGCCAAGAAAAATCCTTTGAACTAAATGTGACAGATCAGGTGCTGGTTCATGGTGTTATTGACCGGATTGACCAA
TTAGATGATGGTAGTTTAGGAGTTGTTGACTATAAATCTAGCGCTAGCCAATTTGATATTGGAACATTTTACAATGGCTT
GAGCTCGCAACTAATTACATACCTCGCTGTTTTACAGCAGCAGTTTGAACCAGCTGATCAAGAGCATTTATTTGGAGCTA
TGTATCTGCATCTACAGGATCCTAAAATGGATTTATCAGCTTTCAAAACCCTAGATGACAAACTGGTTGAAAGCCTTTAT
AAGGCATTAACTTATAAAGGTATTTTCTTGGAAAATGAAAAAGAGCATTTGGCGACGGGTGCCTACCAAATTAGAAATGC
CCTTTATTCGGTGGATGAGCTTCAAACCCTCTTGGCCTATAACAATCACCTTTACCTTAAAGCAGCAGAACACATCAAAA
AAGGGCACTTCCTGATTAACCCTTATACCAGTGATGGCAAGTCTGTGCAAGGAGACCAACTAAAAGCCATTACCCGATTT
GAAGCAGACCTTGACTTAGGTCAAGCAAGGCGATTGTTGACCCTGCCTGCTAGAAATAAACGAGATAACTTTTTAAGTCT
AATGAGAGAGGAGGACAACTTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(745-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

41.332

100

0.422

Multiple sequence alignment