Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZY03_RS01430 Genome accession   NZ_CP071178
Coordinates   304108..304635 (+) Length   175 a.a.
NCBI ID   WP_063614489.1    Uniprot ID   -
Organism   Enterobacter kobei strain CDL29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 299108..309635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY03_RS01410 (JZY03_01410) aphA 299432..300145 (+) 714 WP_014882148.1 acid phosphatase AphA -
  JZY03_RS01415 (JZY03_01415) - 300259..300675 (+) 417 WP_014882149.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JZY03_RS01420 (JZY03_01420) - 300678..301031 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  JZY03_RS01425 (JZY03_01425) uvrA 301034..303856 (-) 2823 WP_063614488.1 excinuclease ABC subunit UvrA -
  JZY03_RS01430 (JZY03_01430) ssb 304108..304635 (+) 528 WP_063614489.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JZY03_RS01435 (JZY03_01435) - 304692..304973 (-) 282 WP_063614490.1 YjcB family protein -
  JZY03_RS01440 (JZY03_01440) - 305501..307066 (+) 1566 WP_023336605.1 EAL domain-containing protein -
  JZY03_RS01445 (JZY03_01445) soxS 307073..307399 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  JZY03_RS01450 (JZY03_01450) soxR 307498..307956 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  JZY03_RS01455 (JZY03_01455) - 308314..308985 (+) 672 WP_023331807.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18751.76 Da        Isoelectric Point: 5.2456

>NTDB_id=543489 JZY03_RS01430 WP_063614489.1 304108..304635(+) (ssb) [Enterobacter kobei strain CDL29]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQSGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=543489 JZY03_RS01430 WP_063614489.1 304108..304635(+) (ssb) [Enterobacter kobei strain CDL29]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGAGCGGTGGCGCGCCAGCAGGTGGTGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

47.191

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.36