Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JZX97_RS00205 | Genome accession | NZ_CP071155 |
| Coordinates | 43982..44521 (+) | Length | 179 a.a. |
| NCBI ID | WP_003759533.1 | Uniprot ID | A0A6B0JGK2 |
| Organism | Listeria innocua strain LI42 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 38982..49521
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZX97_RS00185 | - | 40101..41186 (+) | 1086 | WP_185625548.1 | SIS domain-containing protein | - |
| JZX97_RS00190 | - | 41389..42048 (+) | 660 | WP_003772689.1 | DedA family protein | - |
| JZX97_RS00195 | arcA | 42121..43353 (+) | 1233 | WP_185513091.1 | arginine deiminase | - |
| JZX97_RS00200 | rpsF | 43633..43926 (+) | 294 | WP_003718123.1 | 30S ribosomal protein S6 | - |
| JZX97_RS00205 | ssbA | 43982..44521 (+) | 540 | WP_003759533.1 | single-stranded DNA-binding protein | Machinery gene |
| JZX97_RS00210 | rpsR | 44565..44804 (+) | 240 | WP_003721669.1 | 30S ribosomal protein S18 | - |
| JZX97_RS00215 | - | 44960..45571 (+) | 612 | WP_003759535.1 | PepSY domain-containing protein | - |
| JZX97_RS00220 | - | 45827..46441 (+) | 615 | WP_003764750.1 | accessory gene regulator ArgB-like protein | - |
| JZX97_RS00225 | - | 46425..46586 (+) | 162 | WP_003721672.1 | cyclic lactone autoinducer peptide | - |
| JZX97_RS00230 | - | 46682..47977 (+) | 1296 | WP_010990170.1 | sensor histidine kinase | - |
| JZX97_RS00235 | - | 47996..48724 (+) | 729 | WP_003759538.1 | LytTR family DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19604.25 Da Isoelectric Point: 4.7306
>NTDB_id=543333 JZX97_RS00205 WP_003759533.1 43982..44521(+) (ssbA) [Listeria innocua strain LI42]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGGNNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNN
DPFASDGKPIDISDDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGGNNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNN
DPFASDGKPIDISDDDLPF
Nucleotide
Download Length: 540 bp
>NTDB_id=543333 JZX97_RS00205 WP_003759533.1 43982..44521(+) (ssbA) [Listeria innocua strain LI42]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACCTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGCCGGGTTCAAACTCGT
AATTACGAGGGAAACGATGGCAAACGTGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGCAA
TTCTAATGGCGGTGGCGGAAATAATAACTATCAAGGCGGAAATAACAACAATAATTATAATAACGGTGGAAATAACTTCG
GACAAGCACCTACTAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAAT
GATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTACCATTCTAA
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACCTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGCCGGGTTCAAACTCGT
AATTACGAGGGAAACGATGGCAAACGTGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAACCGCGCAA
TTCTAATGGCGGTGGCGGAAATAATAACTATCAAGGCGGAAATAACAACAATAATTATAATAACGGTGGAAATAACTTCG
GACAAGCACCTACTAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAAT
GATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
67.039 |
100 |
0.67 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.645 |
100 |
0.559 |
| ssb | Vibrio cholerae strain A1552 |
33.673 |
100 |
0.369 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
59.218 |
0.363 |
| ssb | Glaesserella parasuis strain SC1401 |
34.946 |
100 |
0.363 |