Detailed information NTG0543167

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: JZI48_RS04270
• Genome accession: NZ_CP071145
• Coordinates: 902476..903510 (-)
• Length: 344 a.a.
• NCBI ID: WP_012678811.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain 470_007
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 897476..908510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZI48_RS04235 (JZI48_04235)	comYH	898295..899248 (-)	954	WP_012678816.1	class I SAM-dependent methyltransferase	Machinery gene
JZI48_RS04240 (JZI48_04240)	-	899333..900675 (-)	1343	Protein_852	IS3 family transposase	-
JZI48_RS04245 (JZI48_04245)	comGG	900741..901103 (-)	363	WP_012678815.1	competence type IV pilus minor pilin ComGG	-
JZI48_RS04250 (JZI48_04250)	comYF	901081..901515 (-)	435	WP_012678814.1	competence type IV pilus minor pilin ComGF	Machinery gene
JZI48_RS04255 (JZI48_04255)	comGE	901502..901792 (-)	291	WP_012678813.1	competence type IV pilus minor pilin ComGE	-
JZI48_RS04260 (JZI48_04260)	comGD	901749..902174 (-)	426	WP_012678812.1	competence type IV pilus minor pilin ComGD	-
JZI48_RS04265 (JZI48_04265)	comGC/cglC	902152..902475 (-)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
JZI48_RS04270 (JZI48_04270)	comYB	902476..903510 (-)	1035	WP_012678811.1	competence type IV pilus assembly protein ComGB	Machinery gene
JZI48_RS04275 (JZI48_04275)	comGA/cglA	903443..904381 (-)	939	WP_012678810.1	competence type IV pilus ATPase ComGA	Machinery gene
JZI48_RS04280 (JZI48_04280)	-	904563..905210 (-)	648	WP_012678809.1	ATP-binding cassette domain-containing protein	-
JZI48_RS04285 (JZI48_04285)	-	905212..907215 (-)	2004	WP_012678808.1	DUF1430 domain-containing protein	-
JZI48_RS04290 (JZI48_04290)	-	907752..908117 (-)	366	WP_012514777.1	DUF1033 family protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39431.69 Da
• Isoelectric Point: 9.4359

>NTDB_id=543167 JZI48_RS04270 WP_012678811.1 902476..903510(-) (comYB) [Streptococcus equi subsp. equi strain 470_007]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQQMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=543167 JZI48_RS04270 WP_012678811.1 902476..903510(-) (comYB) [Streptococcus equi subsp. equi strain 470_007]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTC
TAGTGGTTATCATGCTAGGCTTGCGTCATTACCTAATCCCTCAGCTAGAGAGTCAAAATACCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACAGATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.81	97.674	0.477
comGB/cglB	Streptococcus mitis SK321	49.249	96.802	0.477
comGB/cglB	Streptococcus pneumoniae Rx1	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae D39	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae R6	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae TIGR4	48.649	96.802	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	46.933	94.767	0.445