Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYK05_RS00825 Genome accession   NZ_CP071129
Coordinates   175533..177068 (-) Length   511 a.a.
NCBI ID   WP_206467413.1    Uniprot ID   -
Organism   Caballeronia sp. M1242     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 170533..182068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYK05_RS00810 (JYK05_00810) - 172499..173839 (+) 1341 WP_206467410.1 sigma-54 dependent transcriptional regulator -
  JYK05_RS00815 (JYK05_00815) - 173888..174427 (-) 540 WP_206467411.1 TlpA disulfide reductase family protein -
  JYK05_RS00820 (JYK05_00820) - 174585..175169 (+) 585 WP_206467412.1 hypothetical protein -
  JYK05_RS00825 (JYK05_00825) comM 175533..177068 (-) 1536 WP_206467413.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYK05_RS00830 (JYK05_00830) - 177166..177426 (-) 261 WP_159835097.1 accessory factor UbiK family protein -
  JYK05_RS00835 (JYK05_00835) - 177824..178162 (+) 339 WP_014190273.1 P-II family nitrogen regulator -
  JYK05_RS00840 (JYK05_00840) - 178193..179686 (+) 1494 WP_206467414.1 ammonium transporter -
  JYK05_RS00845 (JYK05_00845) gshA 179978..181267 (+) 1290 WP_206467415.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53863.60 Da        Isoelectric Point: 7.4048

>NTDB_id=542953 JYK05_RS00825 WP_206467413.1 175533..177068(-) (comM) [Caballeronia sp. M1242]
MSLAVVRSRAPAPGRAPEVVVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVSRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAESLANREFAGELSLTGALRPMRGAFAMVCGAARQYAGSASVPEIYVPLASAAEAALVPGIDV
FGAADLPELCAHLNGVPDARLRPAQATTLSDALSAPSPDLADVIGHPGARRALEVAAAGGHHLLMVGPPGAGKSMLAARL
PGLLPPMSDDEALTSAAILSASSLGFHPAQWRQRPFRAPHHSSSSVALVGGRNPPQPGEITLAHLGVLFLDELPEFDRKV
LETLREPLEAGRITISRAAQQADFPAACQLVAAMNPCPCGWRGDPSGRCRCSPEIATRYLRKLSGPLMDRIDIQIELPAL
SPAELSARSAKRGESSAQVAARVAVARETQLRRQGKTNRELDGREADDVCRPDSAGEALLRSAGERFGWSARAYYRVLKV
VRTIADLAGVDTPDAAHVAEAVQYRRALGIA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=542953 JYK05_RS00825 WP_206467413.1 175533..177068(-) (comM) [Caballeronia sp. M1242]
ATGTCGCTTGCCGTGGTACGCAGCCGCGCGCCCGCCCCTGGGCGCGCGCCGGAAGTCGTCGTCGAAGTCCATCTTGCCAA
CGGGCTGCCGTCATTCTCCATCGTCGGCCTGCCCGATCTCGAAGTCCGCGAAAGCCGTGAGCGCGTGCGCGCCGCGTTGC
AGAACTGCGGCTTCGATTTTCCCGTCAGCCGTATCACCGTCAATCTCGCGCCTGCCGATCTGCCGAAGGAATCCGGCCGC
TTCGATCTACCTATCGCGCTCGGCATTCTCGCCGCGAGCGGGCAAATTCCCGCGGAATCGCTCGCGAATCGTGAATTCGC
GGGCGAGTTATCGCTGACCGGCGCGCTGCGCCCGATGCGCGGCGCGTTCGCGATGGTCTGCGGCGCGGCGCGCCAGTACG
CGGGCAGCGCCAGTGTTCCCGAGATATACGTGCCGCTCGCGAGCGCCGCCGAGGCCGCGCTGGTGCCAGGCATCGACGTT
TTCGGGGCGGCGGATCTTCCCGAACTGTGCGCGCATCTTAATGGCGTGCCAGACGCGCGGCTGCGGCCCGCGCAAGCGAC
AACGCTTTCGGACGCGTTGTCGGCGCCGTCGCCCGATCTCGCCGATGTCATCGGTCATCCGGGCGCGCGACGGGCGCTCG
AAGTGGCGGCGGCGGGCGGGCATCATCTGCTGATGGTCGGGCCGCCGGGCGCGGGCAAGTCGATGCTGGCGGCGCGTCTG
CCCGGCCTTTTGCCGCCGATGTCCGACGACGAAGCGCTCACGTCCGCCGCCATTCTCTCGGCGAGCTCGCTCGGCTTTCA
CCCGGCGCAGTGGCGGCAGCGGCCGTTTCGCGCGCCGCATCATTCGTCGAGTTCGGTCGCGCTCGTCGGCGGGCGCAATC
CGCCGCAACCAGGCGAGATCACGCTCGCGCATCTGGGCGTACTCTTTCTCGACGAGCTTCCCGAATTCGATCGCAAGGTG
CTCGAAACGCTGCGCGAGCCGCTCGAAGCCGGCCGCATCACCATTTCGCGGGCCGCCCAGCAAGCCGACTTCCCTGCCGC
CTGCCAACTCGTCGCCGCGATGAACCCGTGTCCGTGCGGGTGGCGCGGCGACCCTTCCGGCCGATGCCGATGCTCGCCGG
AGATCGCCACGCGTTACTTGCGCAAGCTGTCCGGGCCGCTCATGGACCGCATCGACATTCAGATCGAACTGCCCGCGCTC
TCGCCGGCGGAATTGTCGGCGCGCAGCGCGAAGCGTGGCGAATCGAGCGCGCAGGTCGCGGCACGCGTGGCGGTCGCGCG
CGAGACGCAGTTGCGCCGGCAGGGCAAGACGAATCGCGAGCTGGATGGCCGCGAAGCCGACGACGTTTGCCGCCCCGATT
CCGCCGGCGAGGCGCTGCTGCGCTCGGCGGGAGAGCGGTTCGGCTGGTCGGCGCGGGCGTACTACCGCGTGCTGAAAGTG
GTGCGGACCATCGCGGACCTCGCCGGCGTCGACACGCCGGACGCCGCGCACGTCGCGGAGGCGGTCCAGTACCGGCGGGC
GCTCGGCATCGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-404)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.267

100

0.515
  comM Haemophilus influenzae Rd KW20

49.706

100

0.497
  comM Vibrio campbellii strain DS40M4

50.099

98.826

0.495
  comM Glaesserella parasuis strain SC1401

48.814

99.022

0.483
  comM Legionella pneumophila str. Paris

46.628

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.628

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.888

97.652

0.429