Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JY391_RS22230 Genome accession   NZ_CP071070
Coordinates   4704716..4706236 (+) Length   506 a.a.
NCBI ID   WP_211935037.1    Uniprot ID   -
Organism   Citrobacter sedlakii strain 3347689II     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4699716..4711236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY391_RS22205 (JY391_22205) ilvE 4701271..4702200 (-) 930 WP_211935035.1 branched-chain-amino-acid transaminase -
  JY391_RS22210 (JY391_22210) ilvM 4702220..4702483 (-) 264 WP_042292846.1 acetolactate synthase 2 small subunit -
  JY391_RS22215 (JY391_22215) ilvG 4702480..4704126 (-) 1647 WP_211935036.1 acetolactate synthase 2 catalytic subunit -
  JY391_RS24010 (JY391_22220) ilvX 4704129..4704179 (-) 51 WP_204375586.1 peptide IlvX -
  JY391_RS22225 (JY391_22225) ilvL 4704266..4704364 (-) 99 WP_024149608.1 ilv operon leader peptide -
  JY391_RS22230 (JY391_22230) comM 4704716..4706236 (+) 1521 WP_211935037.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JY391_RS22235 (JY391_22235) maoP 4706262..4706600 (-) 339 WP_042292859.1 macrodomain Ori organization protein MaoP -
  JY391_RS22240 (JY391_22240) hdfR 4706719..4707552 (+) 834 WP_060569256.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55003.91 Da        Isoelectric Point: 7.6533

>NTDB_id=542679 JY391_RS22230 WP_211935037.1 4704716..4706236(+) (comM) [Citrobacter sedlakii strain 3347689II]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLKTHRLDQYELVGELALTGALRGVPGAISSATEAIRAGRSIIVAKENEDEVGLIDGDGCLIADHL
QAVCAFLEGKQPLDPPSSSVWGSSPTHDDINDIIGQEQGKRSLEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLSNK
EALESAAILSLVNSTSVQKQWKQRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKIAYPARFQLVAAMNPSPTGHYQGKHNRCTPEQTLRYLGRLSGPFLDRFDLSLEIPLLPAGMLSQTEVKG
ESSATVKQRVIAAQERQYRRQGKLNAHLQNKEIRQHCPLNNEDSQWLEETLIHLGLSIRAWQRLLKVSRTIADLEQAEGI
TRQHLQEAVSYRAIDRLLAHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=542679 JY391_RS22230 WP_211935037.1 4704716..4706236(+) (comM) [Citrobacter sedlakii strain 3347689II]
ATGTCACTGTCAATTGTTCATACGCGAGCTGCGCTCGGCGTTAACGCGCCGGCTATCACAATCGAAGTCCATATCAGTAA
CGGGCTCCCAGGCCTGACGCTGGTGGGGCTGCCGGAAACCACCGTAAAGGAGGCCCGGGATCGGGTTCGTAGCGCTATTA
TCAATAGCGGGTATGAATTCCCGGCTAAGAAAATCACGATTAATCTTGCCCCTGCAGATCTCCCCAAGGAGGGAGGGCGA
TATGATTTACCTATCGCCGTTGCGCTTCTGGTGGCTTCTGAGCAGCTTAAGACCCATAGGCTTGATCAATATGAGTTAGT
GGGCGAATTAGCGCTTACAGGCGCGCTACGTGGCGTTCCTGGCGCCATCTCCAGCGCTACCGAAGCGATACGCGCAGGAA
GAAGCATCATCGTTGCAAAAGAGAATGAAGACGAAGTAGGATTGATTGACGGCGATGGCTGTCTGATAGCCGACCATCTG
CAGGCAGTCTGCGCATTTCTGGAAGGCAAGCAGCCGCTCGATCCCCCTTCCTCGAGCGTATGGGGTTCTTCGCCCACTCA
CGACGATATCAACGATATTATTGGCCAGGAGCAAGGTAAGCGCAGCCTGGAGATTACGGCGGCAGGTGGACACAACCTGC
TTCTTATTGGCCCTCCGGGCACCGGTAAAACAATGCTTGCCAGTCGGCTTAATGGATTACTACCACCTCTAAGTAACAAA
GAGGCGCTGGAAAGCGCGGCAATCCTTAGCCTGGTTAATTCGACCAGTGTGCAAAAGCAGTGGAAACAGCGCCCCTTTCG
ATCGCCACATCACAGCGCATCCCTGGCGGCAATGGTCGGTGGCGGCTCCATTCCCGGACCCGGTGAAATTTCTCTGGCGC
ATAACGGCATACTTTTTCTCGATGAACTCCCCGAATTCGAACGACGCACATTAGATGCGTTACGTGAGCCGATAGAGTCC
GGGCAGATTCACCTTTCGCGCACGCGGGCTAAGATCGCCTATCCGGCGCGTTTTCAATTGGTTGCGGCAATGAACCCCAG
CCCTACCGGACATTATCAGGGAAAACACAATCGATGTACGCCAGAACAAACACTGCGCTATCTTGGCCGGCTGTCCGGAC
CGTTTCTCGACCGCTTCGATCTTTCTTTGGAGATCCCGTTGCTACCTGCAGGTATGCTCAGTCAGACCGAAGTCAAAGGT
GAAAGTAGCGCTACGGTTAAGCAGCGGGTCATCGCTGCGCAGGAACGGCAGTACAGGCGGCAGGGTAAACTCAACGCACA
TTTGCAAAATAAAGAAATTCGTCAGCATTGCCCGTTGAACAACGAGGATTCGCAGTGGCTGGAAGAAACGCTCATCCATC
TGGGGCTGTCTATCAGGGCGTGGCAACGTTTGTTGAAGGTTTCCCGGACCATTGCTGATCTCGAACAGGCGGAAGGGATC
ACTCGCCAGCATTTACAGGAAGCAGTGAGCTACCGGGCCATAGACAGGTTGCTTGCTCATCTGCAGAAACTCCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.369

100

0.595
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

46.68

98.221

0.458
  comM Legionella pneumophila strain ERS1305867

46.68

98.221

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

99.802

0.439