Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JY391_RS20745 Genome accession   NZ_CP071070
Coordinates   4377087..4377605 (-) Length   172 a.a.
NCBI ID   WP_211934955.1    Uniprot ID   -
Organism   Citrobacter sedlakii strain 3347689II     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4372087..4382605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY391_RS20740 (JY391_20740) - 4374313..4377024 (+) 2712 WP_211935837.1 cation-transporting P-type ATPase -
  JY391_RS20745 (JY391_20745) ssb 4377087..4377605 (-) 519 WP_211934955.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JY391_RS20750 (JY391_20750) uvrA 4377860..4380682 (+) 2823 WP_042291194.1 excinuclease ABC subunit UvrA -
  JY391_RS20755 (JY391_20755) - 4380725..4381081 (-) 357 WP_042291198.1 MmcQ/YjbR family DNA-binding protein -
  JY391_RS20760 (JY391_20760) - 4381084..4381500 (-) 417 WP_211934956.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JY391_RS20765 (JY391_20765) aphA 4381609..4382322 (-) 714 WP_060570402.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18636.63 Da        Isoelectric Point: 5.2358

>NTDB_id=542676 JY391_RS20745 WP_211934955.1 4377087..4377605(-) (ssb) [Citrobacter sedlakii strain 3347689II]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGAPAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAPSN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=542676 JY391_RS20745 WP_211934955.1 4377087..4377605(-) (ssb) [Citrobacter sedlakii strain 3347689II]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAACAGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGTAAGTTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGCTCTCAGGTATACATC
GAAGGTCAACTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACGGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGCGCCGGCAGGCGGTCAGCAGCAGGGCGGTTGGGGTCAGCCGC
AGCAACCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCACCGGCACCGTCTAAC
GAACCGCCAATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.785
  ssb Glaesserella parasuis strain SC1401

58.564

100

0.616
  ssb Neisseria meningitidis MC58

46.067

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.366