Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JY390_RS00880 Genome accession   NZ_CP071068
Coordinates   167495..169021 (-) Length   508 a.a.
NCBI ID   WP_141173169.1    Uniprot ID   -
Organism   Providencia stuartii strain 3347685     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 162495..174021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY390_RS00865 (JY390_00865) - 164981..165775 (-) 795 Protein_155 transposase -
  JY390_RS00870 (JY390_00870) hdfR 166015..166860 (-) 846 WP_004915423.1 HTH-type transcriptional regulator HdfR -
  JY390_RS00875 (JY390_00875) - 166972..167310 (+) 339 WP_004915426.1 DUF413 domain-containing protein -
  JY390_RS00880 (JY390_00880) comM 167495..169021 (-) 1527 WP_141173169.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JY390_RS00885 (JY390_00885) ilvL 169501..169602 (+) 102 WP_071599630.1 ilv operon leader peptide -
  JY390_RS00890 (JY390_00890) ilvG 169736..171382 (+) 1647 WP_004915430.1 acetolactate synthase 2 catalytic subunit -
  JY390_RS00895 (JY390_00895) ilvM 171379..171648 (+) 270 WP_004915433.1 acetolactate synthase 2 small subunit -
  JY390_RS00900 (JY390_00900) - 171661..172587 (+) 927 WP_004915437.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55653.42 Da        Isoelectric Point: 8.9412

>NTDB_id=542642 JY390_RS00880 WP_141173169.1 167495..169021(-) (comM) [Providencia stuartii strain 3347685]
MALAIVYTRASIGMNAPLVTVEAHISNGLPGLTLVGLPETAVKESRDRVRSALLNSGFEFPAKKMTINLAPADLPKEGGR
YDLAIAIAILASSGQVPTKILHQYEFLGELALSGHIRHVNGAIPAALAALTQKRQLVLSSENQYELNLLPDNSVKFAGTL
LELCHFLYEKMTLSGNFHPTEIPEPPICDRNISDIIGQEQGKRALEICASGGHNLLLLGPPGTGKTMLASRLKTLLPSLT
PQEALEVASIHSLCHSSDLTSPWPPRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELPEFSRSVLDALREPL
ESRQVIISRAKAKVCFPANFQLIAALNPSPTGQYQGDYCRSSSTKILRYLSRVSGPFLDRFDLSIEIPLLPLGTLSHQQY
QSENSEQIRARVILAREIQMKRMGKLNSQLTARETTNLCQLTSKDSLFLEHALNKLGLSIRAWHRILRVARTIADLQNTN
NIEKPHLLEALGYRAMDKLLLHLQKQVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=542642 JY390_RS00880 WP_141173169.1 167495..169021(-) (comM) [Providencia stuartii strain 3347685]
ATGGCATTAGCAATTGTGTATACAAGAGCATCGATAGGAATGAATGCGCCACTGGTTACTGTTGAAGCACATATTAGTAA
TGGGCTACCTGGATTGACACTTGTAGGTTTACCTGAAACGGCTGTAAAAGAATCGAGAGATAGAGTACGGAGCGCATTAT
TAAACAGCGGTTTTGAATTCCCTGCAAAAAAAATGACGATTAACTTAGCCCCTGCCGATCTCCCGAAAGAAGGGGGACGT
TACGATCTTGCAATAGCAATCGCTATCTTAGCGTCATCAGGCCAAGTGCCTACAAAAATACTTCATCAGTATGAATTTCT
CGGTGAACTCGCTTTGTCTGGTCATATTCGCCATGTAAATGGTGCTATCCCTGCCGCACTCGCGGCATTAACACAAAAAA
GGCAACTCGTTCTTTCATCTGAAAATCAATATGAGCTGAATTTATTACCTGATAATAGTGTTAAGTTTGCAGGAACATTA
TTAGAACTTTGTCATTTTTTATACGAGAAAATGACATTATCAGGTAATTTCCATCCGACCGAAATCCCTGAGCCCCCCAT
TTGCGACAGGAATATTAGCGATATTATTGGACAAGAGCAGGGAAAAAGAGCGTTAGAGATCTGTGCAAGTGGTGGGCACA
ACTTATTGTTATTAGGCCCTCCTGGCACAGGAAAAACGATGCTAGCAAGTCGCCTAAAAACATTACTACCGTCCCTAACG
CCACAGGAAGCCCTAGAAGTCGCCTCTATACATAGCCTATGCCATTCAAGCGATTTAACTTCTCCTTGGCCTCCTAGACC
CTTTAGAGCTCCTCACCATAGCGCGTCAATGGCAGCACTCATTGGTGGAGGGAGCCTTCCTAAACCCGGTGAAATATCAT
TAGCCCATAATGGCATTTTATTTCTGGATGAATTGCCTGAGTTTAGCCGCTCTGTACTTGACGCATTACGTGAGCCACTT
GAATCAAGGCAAGTTATTATTTCCCGCGCTAAAGCAAAAGTGTGTTTCCCAGCCAACTTTCAACTCATCGCCGCACTGAA
CCCAAGCCCTACAGGCCAATATCAAGGTGATTACTGCCGAAGCTCCTCCACGAAAATCTTACGCTACTTATCACGCGTTT
CAGGTCCTTTTCTTGATCGATTTGATCTGTCTATTGAAATACCGCTGCTTCCGTTGGGTACACTCAGTCATCAACAGTAT
CAAAGCGAAAATAGTGAGCAAATCCGCGCTAGAGTCATACTTGCAAGAGAGATACAAATGAAAAGAATGGGGAAACTCAA
TAGCCAATTAACCGCCAGAGAAACGACAAACCTATGCCAACTTACATCCAAAGATTCACTTTTTTTGGAGCATGCCTTAA
ACAAACTTGGGTTATCGATACGTGCTTGGCATCGCATTTTGAGAGTCGCTCGAACTATTGCCGACTTACAAAATACCAAT
AATATCGAAAAACCCCATCTTCTCGAAGCTCTCGGTTATAGAGCGATGGATAAGTTATTGCTTCATTTGCAAAAACAAGT
AAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.87

99.606

0.606
  comM Glaesserella parasuis strain SC1401

60.511

100

0.606
  comM Haemophilus influenzae Rd KW20

59.883

100

0.602
  comM Vibrio campbellii strain DS40M4

59.252

100

0.593
  comM Legionella pneumophila str. Paris

48.104

98.622

0.474
  comM Legionella pneumophila strain ERS1305867

48.104

98.622

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.451