Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JY395_RS21765 Genome accession   NZ_CP071063
Coordinates   4608118..4609638 (+) Length   506 a.a.
NCBI ID   WP_182946082.1    Uniprot ID   -
Organism   Enterobacter mori strain 08-091     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4603118..4614638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY395_RS21740 (JY395_21725) ilvE 4604683..4605612 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  JY395_RS21745 (JY395_21730) ilvM 4605631..4605894 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  JY395_RS21750 (JY395_21735) ilvG 4605891..4607537 (-) 1647 WP_215230404.1 acetolactate synthase 2 catalytic subunit -
  JY395_RS21760 (JY395_21745) ilvL 4607677..4607775 (-) 99 WP_001311244.1 ilv operon leader peptide -
  JY395_RS21765 (JY395_21750) comM 4608118..4609638 (+) 1521 WP_182946082.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JY395_RS21770 (JY395_21755) - 4609668..4610006 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  JY395_RS21775 (JY395_21760) hdfR 4610125..4610946 (+) 822 WP_042719103.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55069.98 Da        Isoelectric Point: 6.8206

>NTDB_id=542637 JY395_RS21765 WP_182946082.1 4608118..4609638(+) (comM) [Enterobacter mori strain 08-091]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDEVTDVPDDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTALQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGMLRQTGIQS
ESSANVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAEWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=542637 JY395_RS21765 WP_182946082.1 4608118..4609638(+) (comM) [Enterobacter mori strain 08-091]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCGGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACAACCAGGCTAGGTTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCCATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGTCCGAACCGGAGGAGTGTGACGATGAGGTAACGGATGTACC
AGATGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCAGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAGACCATGCTGGCGAGCAGGCTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAGAGCGCCGCGATATATAGCCTGATCGGTTCTACGGCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCGCTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGTGCCAAAATAAGCTATCCCGCCAGGTTCCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACGGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTTCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCGCCGCCTGGCATGCTCAGGCAGACGGGTATACAGAGT
GAAAGCTCTGCGAATGTTCGCGAGCGGGTTATCGCGGCGCAGGCGCGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGAGTGGCTGGAAGAGACATTGACGCGAT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATCGACCGTTTGCTACTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443