Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JY395_RS01430 Genome accession   NZ_CP071063
Coordinates   297403..297933 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter mori strain 08-091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292403..302933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY395_RS01410 (JY395_01405) aphA 292726..293439 (+) 714 WP_172701648.1 acid phosphatase AphA -
  JY395_RS01415 (JY395_01410) - 293553..293969 (+) 417 WP_042718376.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JY395_RS01420 (JY395_01415) - 293972..294325 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  JY395_RS01425 (JY395_01420) uvrA 294329..297151 (-) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  JY395_RS01430 (JY395_01425) ssb 297403..297933 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JY395_RS01435 (JY395_01430) - 297994..298275 (-) 282 WP_003860282.1 YjcB family protein -
  JY395_RS01440 (JY395_01435) - 298408..298569 (+) 162 WP_215230498.1 hypothetical protein -
  JY395_RS01445 (JY395_01440) - 298911..300476 (+) 1566 WP_100167220.1 EAL domain-containing protein -
  JY395_RS01450 (JY395_01445) soxS 300483..300809 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  JY395_RS01455 (JY395_01450) soxR 300908..301366 (+) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  JY395_RS01460 (JY395_01455) - 301734..302405 (+) 672 WP_109492559.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=542622 JY395_RS01430 WP_006177466.1 297403..297933(+) (ssb) [Enterobacter mori strain 08-091]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=542622 JY395_RS01430 WP_006177466.1 297403..297933(+) (ssb) [Enterobacter mori strain 08-091]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCCCCGTCTAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364