Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JY500_RS20995 Genome accession   NZ_CP071060
Coordinates   4626426..4627928 (+) Length   500 a.a.
NCBI ID   WP_206254483.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4621426..4632928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS20980 (JY500_20980) - 4621748..4623925 (+) 2178 WP_206254480.1 AsmA family protein -
  JY500_RS20985 (JY500_20985) - 4623938..4625677 (-) 1740 WP_206254481.1 ABC transporter transmembrane domain-containing protein -
  JY500_RS20990 (JY500_20990) - 4625753..4626259 (-) 507 WP_206254482.1 hypothetical protein -
  JY500_RS20995 (JY500_20995) comM 4626426..4627928 (+) 1503 WP_206254483.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JY500_RS21000 (JY500_21000) - 4627978..4628376 (+) 399 WP_206254484.1 hypothetical protein -
  JY500_RS21005 (JY500_21005) - 4628373..4628783 (-) 411 WP_206254485.1 hypothetical protein -
  JY500_RS21010 (JY500_21010) - 4629098..4629715 (+) 618 WP_206254486.1 DJ-1/PfpI family protein -
  JY500_RS21015 (JY500_21015) - 4629751..4630923 (+) 1173 WP_206254487.1 SAM-dependent methyltransferase -
  JY500_RS21020 (JY500_21020) - 4630913..4631905 (+) 993 WP_281391243.1 DUF2804 domain-containing protein -
  JY500_RS21025 (JY500_21025) - 4631925..4632266 (-) 342 WP_206254489.1 hypothetical protein -
  JY500_RS21030 (JY500_21030) - 4632301..4632495 (-) 195 WP_246479716.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52182.64 Da        Isoelectric Point: 8.1505

>NTDB_id=542599 JY500_RS20995 WP_206254483.1 4626426..4627928(+) (comM) [Niveibacterium microcysteis strain HC41]
MSLACVTSRALDGIAAPEVVAEVHLANGLPGFSLVGLPEAEVRESRDRVRAALQTCQFEFPQRRITANLAPADLPKEGGR
FDLPIALGILAASGQIRSGALDGIEFAGELSLDGRLRPVRGALAMALAASRAGRRLVLPADNAGEAALVAGASVFSARSL
LEVVAHLNGQHLLDPVATISGAQTAPAYPDLADVRGQQSAKRALEIAAAGRHSLLMYGPPGSGKSMLAQRLPGILPPMNE
AEALEAAAVQSIDGGFDPARWAVRPVRAPHHSASAAALVGGGASPRPGEISLAHHGVLFLDELPEFDRRVLESLREPLET
GHITVSRAARRADFPARFQLVAAMNPCPCGHHGSNTGRCRCTPDQVARYRGRLSGPLLDRIDMVLEVAAVPATELRATAP
GEASVAVRQRVVAADAVQRARQGTPNSALDAPGVERHCNPDEAGSRLLASAIAHLGLSARGTHRLLRVARTIADLAGCDT
VGAGHVAEAIQLRRSLPMPA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=542599 JY500_RS20995 WP_206254483.1 4626426..4627928(+) (comM) [Niveibacterium microcysteis strain HC41]
ATGAGCCTTGCCTGTGTCACCAGCCGCGCGCTCGATGGCATTGCTGCGCCGGAAGTGGTCGCGGAGGTCCATCTGGCGAA
CGGCCTGCCCGGCTTTTCGCTGGTCGGTCTGCCGGAAGCCGAAGTGCGCGAATCGCGCGACCGGGTGCGTGCCGCATTGC
AGACCTGCCAGTTTGAATTTCCTCAACGCCGCATCACCGCCAACCTCGCACCGGCCGATCTGCCGAAGGAAGGTGGTCGT
TTTGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCTCTGGCCAGATCCGCAGCGGCGCGCTGGACGGCATCGAATTCGC
GGGTGAACTGTCGCTCGACGGCCGGCTGCGCCCGGTGCGTGGCGCGCTGGCAATGGCACTGGCCGCCAGCCGCGCTGGCC
GACGGCTCGTACTGCCGGCCGACAATGCCGGCGAAGCAGCGCTGGTTGCCGGCGCGAGCGTCTTTTCGGCGCGTAGCCTG
CTCGAAGTGGTGGCGCACCTGAACGGCCAACACCTGCTCGACCCGGTGGCAACCATTTCCGGCGCACAGACCGCCCCCGC
TTACCCTGATCTCGCCGATGTCCGCGGGCAGCAGAGTGCCAAGCGCGCGCTGGAGATCGCCGCCGCGGGGCGCCATTCGC
TACTGATGTACGGGCCGCCCGGCAGCGGGAAGTCGATGCTCGCGCAACGCCTGCCGGGCATCCTGCCTCCGATGAACGAG
GCCGAAGCGCTTGAAGCGGCGGCAGTGCAATCGATTGATGGCGGCTTCGATCCCGCACGCTGGGCGGTGCGCCCGGTGCG
TGCGCCACATCACTCGGCATCGGCTGCCGCGCTGGTTGGCGGCGGTGCGAGTCCGCGACCGGGCGAAATTTCGCTCGCCC
ACCACGGCGTCTTGTTCCTCGACGAACTACCCGAGTTCGACCGGCGCGTGCTGGAGAGCCTGCGCGAGCCACTCGAAACG
GGCCACATCACCGTTTCGCGCGCGGCCCGCCGCGCTGACTTCCCGGCACGCTTCCAGCTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGCCATCACGGCAGCAACACTGGCCGCTGCCGCTGCACGCCGGACCAGGTGGCACGCTACCGGGGCCGACTCT
CCGGGCCACTGCTGGACCGCATCGACATGGTGCTGGAAGTGGCCGCCGTACCCGCCACGGAGCTGCGCGCCACAGCGCCC
GGCGAGGCCAGCGTCGCGGTGAGGCAGCGCGTAGTCGCGGCTGACGCGGTGCAACGGGCACGCCAGGGCACACCGAATTC
GGCGCTTGATGCCCCCGGTGTCGAGCGGCACTGCAATCCGGACGAGGCCGGCTCGCGCCTGCTCGCCAGCGCGATCGCGC
ACCTTGGCCTTTCGGCACGGGGCACCCATCGGCTGCTGCGCGTCGCGCGCACAATCGCCGACCTGGCCGGCTGCGATACC
GTGGGTGCGGGCCACGTTGCGGAAGCGATACAGCTCCGCCGCAGCCTGCCGATGCCCGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.141

99

0.536
  comM Vibrio campbellii strain DS40M4

53.939

99

0.534
  comM Haemophilus influenzae Rd KW20

53.094

100

0.532
  comM Glaesserella parasuis strain SC1401

52

100

0.52
  comM Legionella pneumophila str. Paris

49.315

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.315

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.825

100

0.44