Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYG36_RS01460 Genome accession   NZ_CP071007
Coordinates   315518..317011 (-) Length   497 a.a.
NCBI ID   WP_093378099.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310518..322011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS01445 (JYG36_01445) - 311140..312630 (+) 1491 WP_195885310.1 aldehyde dehydrogenase family protein -
  JYG36_RS01450 (JYG36_01450) - 312742..314028 (+) 1287 WP_213602898.1 FAD-binding oxidoreductase -
  JYG36_RS01455 (JYG36_01455) - 314032..315462 (-) 1431 WP_093378095.1 mechanosensitive ion channel family protein -
  JYG36_RS01460 (JYG36_01460) comM 315518..317011 (-) 1494 WP_093378099.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYG36_RS01465 (JYG36_01465) - 317272..317625 (-) 354 WP_093378104.1 gamma-glutamylcyclotransferase family protein -
  JYG36_RS01470 (JYG36_01470) - 317633..317896 (-) 264 WP_010221117.1 accessory factor UbiK family protein -
  JYG36_RS01475 (JYG36_01475) glnK 318226..318564 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  JYG36_RS01480 (JYG36_01480) - 318606..319940 (+) 1335 WP_045200968.1 ammonium transporter -
  JYG36_RS01485 (JYG36_01485) sutA 320405..320731 (+) 327 WP_093378113.1 transcriptional regulator SutA -
  JYG36_RS01490 (JYG36_01490) - 320895..321590 (-) 696 WP_045200972.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52771.40 Da        Isoelectric Point: 7.3669

>NTDB_id=542163 JYG36_RS01460 WP_093378099.1 315518..317011(-) (comM) [Pseudomonas sp. SORT22]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVSHL
LELVAHFNGQSPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLNSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSTNSSH
GESSATIAAQVAAARDIQQQRQGCANAFLDLPGLRHYCGLSTADQSWLESACERLTLSLRAAHRLLKVARTLADLEQAEN
IGRGHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=542163 JYG36_RS01460 WP_093378099.1 315518..317011(-) (comM) [Pseudomonas sp. SORT22]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCCCCGGCGGTCAGTGTTGAAGCGCATCTGGCCAA
TGGTCTGCCGGCACTGACCCTGGTTGGCCTGCCGGAAGCGACCGTGAAAGAAAGCAAGGATCGGGTGCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATCACCCTTAACCTTGCACCCGCGGATTTACCCAAGGATGGCGGACGC
TTTGACCTCGCCATCGCCCTGGGGATCCTTGCCGCCAACGGCCAGTTCCCGATTGCAGCGCTTGGCGAGGTGGAATGCCT
GGGTGAACTGGCGCTGTCCGGGGCAATCCGCTCGGTGCAAGGCGTACTGCCCGCTGCCTTGGCGGCACGAGAAGCCGGCC
GGGCCTTGGTGGTGCCGCAAGAGAATGCCGAAGAAGCCTGTTTAGCATCGGGCCTGGTAGTGTTTGCAGTCAGTCACCTG
CTGGAACTGGTCGCCCACTTCAACGGCCAGAGCCCGCTCAATCCCTACGCTGCCAACGGCCTGTTGCTACAGATCCGTCC
CTACCCCGACCTCAACGAAGTACAGGGCCAGCAAGCCGCCAAGCGCGCACTGCTGGTTGCCGCCGCCGGTGCGCACAACC
TGCTGTTCAGCGGCCCACCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGTTGCCACCGCTGGATGAA
CGCGAAGCGCTGGAGGTGGCGGCGATACAGTCGGTGGCCAGCCATGTGCCGCTGAACAGTTGGCCGCAGCGGCCGTTTCG
CCATCCGCATCACTCGGCCTCCGGTGCTGCACTGGTCGGCGGTGGCAGCCGACCGCAACCAGGAGAGATAACCCTGGCCC
ATCACGGCGTGCTGTTCCTCGATGAGCTGCCGGAGTTCGAGCGGCGGGTACTGGAAGTGCTGCGCGAACCGCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAAATCCGCTTTCCAGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGACCCCACCGGCCGCTGTCGCTGCAGCAGCGAACAGATCCAGCGCTACCGCAACAAACTCT
CCGGGCCCCTGCTCGACCGTATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTGTCCACCAACAGCAGCCAC
GGCGAAAGCAGCGCCACCATTGCCGCGCAAGTCGCCGCCGCCCGCGACATCCAGCAACAGCGCCAGGGCTGTGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCATTACTGCGGGTTATCCACAGCCGACCAGAGCTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCCTTGCGCGCCGCCCATCGCCTGCTCAAGGTGGCGCGCACCCTGGCCGACCTGGAACAGGCTGAAAAC
ATCGGACGCGGGCACCTGGCTGAAGCGCTGCACTATCGCCCGAGCAACCAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.693

100

0.541
  comM Legionella pneumophila str. Paris

49.194

99.799

0.491
  comM Legionella pneumophila strain ERS1305867

49.194

99.799

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.473