Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JYB86_RS13665 Genome accession   NZ_CP070997
Coordinates   2899600..2900658 (-) Length   352 a.a.
NCBI ID   WP_205779175.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894600..2905658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS13640 (JYB86_13640) aroK 2894959..2895501 (-) 543 WP_016658449.1 shikimate kinase AroK -
  JYB86_RS13645 (JYB86_13645) pilQ 2895538..2897706 (-) 2169 WP_205779172.1 type IV pilus secretin PilQ Machinery gene
  JYB86_RS13650 (JYB86_13650) pilP 2897722..2898249 (-) 528 WP_034598246.1 pilus assembly protein PilP Machinery gene
  JYB86_RS13655 (JYB86_13655) pilO 2898249..2898968 (-) 720 WP_205779173.1 type 4a pilus biogenesis protein PilO Machinery gene
  JYB86_RS13660 (JYB86_13660) pilN 2898965..2899600 (-) 636 WP_205779174.1 PilN domain-containing protein Machinery gene
  JYB86_RS13665 (JYB86_13665) pilM 2899600..2900658 (-) 1059 WP_205779175.1 pilus assembly protein PilM Machinery gene
  JYB86_RS13670 (JYB86_13670) ponA 2900830..2903406 (+) 2577 WP_205779176.1 penicillin-binding protein PBP1a -
  JYB86_RS13675 (JYB86_13675) - 2903447..2904751 (-) 1305 WP_205779122.1 IS4 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39011.72 Da        Isoelectric Point: 4.5587

>NTDB_id=542104 JYB86_RS13665 WP_205779175.1 2899600..2900658(-) (pilM) [Acinetobacter indicus strain LYS68A]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLSEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKIIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENIESRCEVIEL
AGLTPKVADVESFAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDVEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=542104 JYB86_RS13665 WP_205779175.1 2899600..2900658(-) (pilM) [Acinetobacter indicus strain LYS68A]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCTCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGATTATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAGAT
CCGGATGGATGCAGAACAATATATTCCTTTCCCATTAGATGAAGTCAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATATCGAGAGTCGCTGTGAAGTGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCATTGAAAATGCCTTTAAAGTCTTTGCTGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTTCTAGACATTGGTCATACCATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAGGTCTTTGGCGGCAAGCAGCTGACCCAAGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATGTTGAAGTGTTGGAGCCGTTCCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGCG
GGAATGCCAATATTCCGGGTCTGGCCAAGCTGCTACAGCAAAAACTGGGTTACCGCGTTACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

83.807

100

0.838
  comM Acinetobacter nosocomialis M2

83.807

100

0.838
  comM Acinetobacter baylyi ADP1

78.977

100

0.79
  pilM Legionella pneumophila strain ERS1305867

40.395

100

0.406