Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   JYB86_RS13650 Genome accession   NZ_CP070997
Coordinates   2897722..2898249 (-) Length   175 a.a.
NCBI ID   WP_034598246.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892722..2903249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS13630 (JYB86_13630) - 2893005..2893841 (-) 837 WP_104472445.1 hypothetical protein -
  JYB86_RS13635 (JYB86_13635) aroB 2893854..2894936 (-) 1083 WP_075167859.1 3-dehydroquinate synthase -
  JYB86_RS13640 (JYB86_13640) aroK 2894959..2895501 (-) 543 WP_016658449.1 shikimate kinase AroK -
  JYB86_RS13645 (JYB86_13645) pilQ 2895538..2897706 (-) 2169 WP_205779172.1 type IV pilus secretin PilQ Machinery gene
  JYB86_RS13650 (JYB86_13650) pilP 2897722..2898249 (-) 528 WP_034598246.1 pilus assembly protein PilP Machinery gene
  JYB86_RS13655 (JYB86_13655) pilO 2898249..2898968 (-) 720 WP_205779173.1 type 4a pilus biogenesis protein PilO Machinery gene
  JYB86_RS13660 (JYB86_13660) pilN 2898965..2899600 (-) 636 WP_205779174.1 PilN domain-containing protein Machinery gene
  JYB86_RS13665 (JYB86_13665) pilM 2899600..2900658 (-) 1059 WP_205779175.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19244.39 Da        Isoelectric Point: 7.1666

>NTDB_id=542101 JYB86_RS13650 WP_034598246.1 2897722..2898249(-) (pilP) [Acinetobacter indicus strain LYS68A]
MKFEKLSLVLVLGLLAAGCDSRIDAVNAQMAEIRNQSPLPIEPAPTFEPAPVFNYAAHQLKSPFIPSSLAAELKIMAGKR
VYPNLSRQLQPLESYALETLSMKGSMRGQRSEILALIQTPDGEIERIQRGSYMGLNHGRVINITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=542101 JYB86_RS13650 WP_034598246.1 2897722..2898249(-) (pilP) [Acinetobacter indicus strain LYS68A]
ATGAAATTTGAAAAACTTTCGTTGGTTCTGGTGTTGGGCCTACTGGCTGCAGGCTGTGATTCACGTATTGATGCCGTGAA
TGCACAAATGGCAGAAATCCGTAATCAGTCGCCGTTACCGATTGAACCGGCACCGACTTTTGAGCCGGCACCTGTATTTA
ACTATGCAGCGCATCAGCTGAAAAGTCCGTTTATACCAAGTTCTCTGGCGGCCGAGCTGAAGATTATGGCGGGTAAACGG
GTTTATCCAAACCTGTCGCGCCAGTTGCAGCCTTTAGAAAGCTATGCACTGGAAACCTTAAGCATGAAAGGCAGCATGCG
CGGGCAACGCAGCGAAATTCTGGCCCTGATTCAAACTCCAGATGGGGAAATTGAACGGATTCAGCGCGGCAGCTATATGG
GCTTGAATCATGGTCGGGTCATTAATATTACGCCGACACAAATTGACTTAATTGAGATTATTCCAGATGGTCGCGAAGGG
TATGTTGAACGTCCAAGAAGTCTAGTACTGATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

73.714

100

0.737
  comL Acinetobacter baylyi ADP1

71.257

95.429

0.68