Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYB86_RS01200 Genome accession   NZ_CP070997
Coordinates   256401..257888 (-) Length   495 a.a.
NCBI ID   WP_205779289.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 251401..262888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01175 (JYB86_01175) - 251899..252285 (-) 387 WP_180046555.1 hypothetical protein -
  JYB86_RS01180 (JYB86_01180) - 252389..252790 (+) 402 WP_005181530.1 MAPEG family protein -
  JYB86_RS01185 (JYB86_01185) ppa 252908..253432 (+) 525 WP_005181532.1 inorganic diphosphatase -
  JYB86_RS01190 (JYB86_01190) - 253533..254846 (-) 1314 WP_104484380.1 OprD family outer membrane porin -
  JYB86_RS01195 (JYB86_01195) - 255608..256342 (+) 735 WP_205779288.1 TorF family putative porin -
  JYB86_RS01200 (JYB86_01200) comM 256401..257888 (-) 1488 WP_205779289.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYB86_RS01205 (JYB86_01205) - 257958..258185 (-) 228 WP_005181545.1 accessory factor UbiK family protein -
  JYB86_RS01210 (JYB86_01210) glnK 258462..258800 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  JYB86_RS01215 (JYB86_01215) - 258863..260263 (+) 1401 WP_168395580.1 ammonium transporter -
  JYB86_RS01220 (JYB86_01220) nrdR 260403..260861 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  JYB86_RS01225 (JYB86_01225) ribD 260885..261973 (+) 1089 WP_205779290.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54080.04 Da        Isoelectric Point: 7.3353

>NTDB_id=542070 JYB86_RS01200 WP_205779289.1 256401..257888(-) (comM) [Acinetobacter indicus strain LYS68A]
MSFAKIYTRGLLGLNAPSIEAEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAADNLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSSEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQMQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=542070 JYB86_RS01200 WP_205779289.1 256401..257888(-) (comM) [Acinetobacter indicus strain LYS68A]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCTATTGAAGCTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCTTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGACAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCTGGTC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCTGCACAACTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCGCTGCAGCCTTTTGCAGCAAGCTCGGAAACCCGTTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTTCGGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATGCAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.6

100

0.521
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Legionella pneumophila str. Paris

50.403

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.505
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469