Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JW907_RS12560 Genome accession   NZ_CP070960
Coordinates   2558619..2558981 (+) Length   120 a.a.
NCBI ID   WP_206200447.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TA-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2553619..2563981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW907_RS12525 (JW907_12525) recF 2553755..2554894 (+) 1140 WP_206200442.1 DNA replication/repair protein RecF -
  JW907_RS12530 (JW907_12530) - 2554833..2555219 (-) 387 WP_206200443.1 hypothetical protein -
  JW907_RS12535 (JW907_12535) - 2555227..2555532 (-) 306 WP_149821405.1 cell division protein SepF -
  JW907_RS12540 (JW907_12540) - 2555770..2556546 (+) 777 WP_225901591.1 energy-coupling factor ABC transporter permease -
  JW907_RS12545 (JW907_12545) - 2556539..2556844 (+) 306 WP_206200444.1 energy-coupling factor ABC transporter substrate-binding protein -
  JW907_RS12550 (JW907_12550) cbiQ 2556852..2557640 (+) 789 WP_206200445.1 cobalt ECF transporter T component CbiQ -
  JW907_RS12555 (JW907_12555) - 2557642..2558502 (+) 861 WP_206200446.1 energy-coupling factor ABC transporter ATP-binding protein -
  JW907_RS12560 (JW907_12560) pilH 2558619..2558981 (+) 363 WP_206200447.1 response regulator transcription factor Machinery gene
  JW907_RS12565 (JW907_12565) - 2558984..2560246 (-) 1263 WP_206200448.1 phospholipid carrier-dependent glycosyltransferase -
  JW907_RS12570 (JW907_12570) - 2560248..2561375 (-) 1128 WP_206200449.1 HhoA/HhoB/HtrA family serine endopeptidase -
  JW907_RS12575 (JW907_12575) - 2561531..2562391 (+) 861 WP_225901722.1 prephenate/arogenate dehydrogenase -
  JW907_RS12580 (JW907_12580) - 2562368..2562859 (-) 492 WP_206200451.1 phosphate-starvation-inducible PsiE family protein -
  JW907_RS12585 (JW907_12585) - 2562862..2563617 (-) 756 WP_206200452.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13446.70 Da        Isoelectric Point: 4.3603

>NTDB_id=541557 JW907_RS12560 WP_206200447.1 2558619..2558981(+) (pilH) [Thermosynechococcus sp. TA-1]
MATIMVVDDSPTLRAMIVQLMKEQNYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAACQSVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=541557 JW907_RS12560 WP_206200447.1 2558619..2558981(+) (pilH) [Thermosynechococcus sp. TA-1]
ATGGCCACAATTATGGTTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTCAGCTGATGAAAGAGCAGAACTATGA
CGTTGTTGAGGCTGAGGATGGTATCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCTGATTTGGTGATTCTGGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTGTGCCGCTGGATTAAGGGTGAAGCGGCTTGCCAAAGTGTGCCCGTGATCATG
TGCACCACCAAAAGCGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTGGATGCCTACATCACCAAACCCTTTGA
TCCTGCAGAACTCATTGCCACTGTTAAACAACTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.622

99.167

0.542
  micA Streptococcus pneumoniae Cp1015

40.336

99.167

0.4
  pilG Acinetobacter baumannii strain A118

40.351

95

0.383
  chpA Acinetobacter baumannii strain A118

39.655

96.667

0.383
  vicR Streptococcus mutans UA159

37.815

99.167

0.375