Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JW972_RS05790 Genome accession   NZ_CP070873
Coordinates   1208830..1210350 (+) Length   506 a.a.
NCBI ID   WP_223667506.1    Uniprot ID   -
Organism   Escherichia fergusonii strain EF91     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1203830..1215350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW972_RS05765 (JW972_05730) ilvE 1205384..1206313 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  JW972_RS05770 (JW972_05735) ilvM 1206333..1206596 (-) 264 WP_105284523.1 acetolactate synthase 2 small subunit -
  JW972_RS05775 (JW972_05740) ilvG 1206593..1208239 (-) 1647 WP_223667509.1 acetolactate synthase 2 catalytic subunit -
  JW972_RS05780 (JW972_05745) ilvX 1208242..1208292 (-) 51 WP_001387183.1 peptide IlvX -
  JW972_RS05785 (JW972_05750) ilvL 1208379..1208477 (-) 99 WP_001311244.1 ilv operon leader peptide -
  JW972_RS05790 (JW972_05755) comM 1208830..1210350 (+) 1521 WP_223667506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JW972_RS05795 (JW972_05760) maoP 1210375..1210713 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  JW972_RS05800 (JW972_05765) hdfR 1210832..1211671 (+) 840 WP_000379255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55109.32 Da        Isoelectric Point: 7.6191

>NTDB_id=541234 JW972_RS05790 WP_223667506.1 1208830..1210350(+) (comM) [Escherichia fergusonii strain EF91]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ESSATVKQRVMAARERQLKRQNKLNAWLDSPEIRQFCKLESEDALWLEETLIHLGLSIRAWQRLLKVARTIADIAQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=541234 JW972_RS05790 WP_223667506.1 1208830..1210350(+) (comM) [Escherichia fergusonii strain EF91]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTACGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCTGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGACGTACACTGGATGCCTTGCGGGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAACCCCAG
CCCTACTGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAACAAACATTACGTTATCTCAATCGACTCTCTGGCC
CCTTTCTCGACCGTTTCGATCTCTCGCTGGAGATCCCATTACCGCCCCCCGGAATTTTGAGTAAAGCGGTAGTGCAGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTAAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGGCAATTCTGCAAGCTTGAGAGCGAAGATGCGTTGTGGCTGGAAGAAACGCTAATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGCTCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445