Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JW886_RS08150 Genome accession   NZ_CP070872
Coordinates   1646390..1647262 (-) Length   290 a.a.
NCBI ID   WP_241003760.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641390..1652262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS08135 (JW886_08135) - 1642718..1643647 (-) 930 WP_200407373.1 peptidyl-prolyl cis-trans isomerase -
  JW886_RS08140 (JW886_08140) - 1643808..1644494 (-) 687 WP_205871817.1 O-methyltransferase -
  JW886_RS08145 (JW886_08145) pepF 1644497..1646302 (-) 1806 WP_205871818.1 oligoendopeptidase F Regulator
  JW886_RS08150 (JW886_08150) coiA 1646390..1647262 (-) 873 WP_241003760.1 competence protein CoiA Machinery gene
  JW886_RS08155 (JW886_08155) - 1647439..1648518 (-) 1080 WP_205871820.1 YdcF family protein -
  JW886_RS08160 (JW886_08160) - 1648661..1650082 (-) 1422 WP_200407378.1 NCS2 family permease -
  JW886_RS08165 (JW886_08165) - 1650377..1651225 (+) 849 WP_075526200.1 Cof-type HAD-IIB family hydrolase -
  JW886_RS08170 (JW886_08170) - 1651416..1652132 (-) 717 WP_082272354.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 34745.75 Da        Isoelectric Point: 9.7158

>NTDB_id=541220 JW886_RS08150 WP_241003760.1 1646390..1647262(-) (coiA) [Lactococcus taiwanensis strain K_LL004]
MVFKNGSIKLPHFAHKQLKTCTLGNENESEQHLMLKKELYEWLKETESVEIEHYLPELRQTPDLLINGKVALEIQCSPLS
LKRLHERTMNYRLHGFKVVWLMGRDLWLGNRLTELKKQLLCYSENHGFHYWELDLTKRVLRLQSLIHEDLRGRLFYVTHS
FLFKEKPLLDCLRTPFVQQELLKMAVYPDNQLQHFIHKQLFHKSPKWLHLQSLYYQKGKNILDLDFMRPYIAPPGLNLLV
PFMDNLTGSSFEQLSKIPVSYYQNFLDVFQKKKIEILYPPRFYAIMKKQK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=541220 JW886_RS08150 WP_241003760.1 1646390..1647262(-) (coiA) [Lactococcus taiwanensis strain K_LL004]
GTGGTTTTTAAAAATGGCTCCATCAAATTACCCCATTTTGCGCATAAGCAGTTGAAAACATGTACGTTAGGGAACGAAAA
TGAGTCAGAGCAACATCTGATGCTCAAAAAAGAACTTTATGAATGGCTGAAAGAAACAGAATCAGTGGAAATTGAACATT
ACTTACCAGAGCTTAGGCAAACCCCAGATCTATTAATTAATGGGAAAGTTGCCCTAGAAATTCAATGTTCCCCCCTCTCC
TTGAAACGGCTGCATGAGCGTACAATGAATTATCGCTTACATGGTTTTAAGGTGGTGTGGTTAATGGGGAGAGATTTATG
GTTAGGTAATCGTTTAACAGAATTGAAAAAACAACTGCTTTGTTATTCCGAAAATCACGGTTTTCATTACTGGGAATTGG
ATCTAACTAAACGTGTGTTAAGACTACAGTCCCTGATTCATGAAGACTTAAGGGGACGGTTGTTTTATGTGACACATTCC
TTTTTGTTTAAAGAAAAACCGCTTTTGGACTGCTTGAGAACTCCATTTGTTCAGCAAGAGCTTTTAAAAATGGCTGTTTA
CCCGGATAATCAATTGCAACACTTTATCCACAAGCAGCTTTTCCACAAATCCCCGAAATGGTTACATCTCCAATCGTTAT
ACTATCAGAAAGGTAAAAATATCTTAGATCTGGACTTTATGCGTCCTTACATTGCCCCACCTGGATTAAATCTTCTTGTT
CCTTTTATGGATAACCTAACAGGATCCTCATTTGAACAACTCTCTAAAATTCCTGTAAGCTATTATCAAAATTTTCTGGA
TGTGTTCCAAAAGAAGAAAATTGAGATACTCTATCCACCGCGGTTCTATGCTATAATGAAGAAACAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(2-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

56.897

100

0.569
  coiA Streptococcus pneumoniae TIGR4

41.696

97.586

0.407
  coiA Streptococcus pneumoniae Rx1

41.696

97.586

0.407
  coiA Streptococcus pneumoniae D39

41.696

97.586

0.407
  coiA Streptococcus pneumoniae R6

41.696

97.586

0.407
  coiA Streptococcus mitis NCTC 12261

42.182

94.828

0.4