Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JW886_RS08145 Genome accession   NZ_CP070872
Coordinates   1644497..1646302 (-) Length   601 a.a.
NCBI ID   WP_205871818.1    Uniprot ID   A0AA45QR35
Organism   Lactococcus taiwanensis strain K_LL004     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639497..1651302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS08130 (JW886_08130) alaS 1639835..1642453 (-) 2619 WP_205871816.1 alanine--tRNA ligase -
  JW886_RS08135 (JW886_08135) - 1642718..1643647 (-) 930 WP_200407373.1 peptidyl-prolyl cis-trans isomerase -
  JW886_RS08140 (JW886_08140) - 1643808..1644494 (-) 687 WP_205871817.1 O-methyltransferase -
  JW886_RS08145 (JW886_08145) pepF 1644497..1646302 (-) 1806 WP_205871818.1 oligoendopeptidase F Regulator
  JW886_RS08150 (JW886_08150) coiA 1646390..1647262 (-) 873 WP_241003760.1 competence protein CoiA Machinery gene
  JW886_RS08155 (JW886_08155) - 1647439..1648518 (-) 1080 WP_205871820.1 YdcF family protein -
  JW886_RS08160 (JW886_08160) - 1648661..1650082 (-) 1422 WP_200407378.1 NCS2 family permease -
  JW886_RS08165 (JW886_08165) - 1650377..1651225 (+) 849 WP_075526200.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69887.56 Da        Isoelectric Point: 4.9580

>NTDB_id=541219 JW886_RS08145 WP_205871818.1 1644497..1646302(-) (pepF) [Lactococcus taiwanensis strain K_LL004]
MAKERSEIQEAHTWDLSTIFATDEAWEKELEHVKQSVENSGERFSGHLLDSAQSLLKITEVMLELSQKVEKLYVYASMKN
DQDTRVAKYQEYQSKASNLYAKFGEAFAFYEPEFLTLQPSQLDEMMGIAPALQAYQHMFERLFAKKQHILSPKEEKLLAS
ASEIFGSASETFEIFDNADITFPKVKNEEGEQVQLTHGNFITLMESKDRSVRKAAYQALYSHYEQFQHTYAKTLQTNVKV
HNFNAQIRGYHSAREAALARDFIPERVYDILIEEINQALPLLHRYMKLRQTVLQLPDLKMYDVYTPLSKLDYKFNYKEGV
EKAKEVLAIFGNEYRRRVESAFKERWIDVEENIGKRSGAYSGGSYDTKAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGEYPIFLAEIASTTNENILTETLLKESEDDKERFALLNHWLDSFKGTVFRQSQFAEFEQLIHEQDARGEVLTSE
YLNRCYAELNEKYYGLLADENKEIQYEWARIPHFYYDFYVFQYATGFAAASYLAEKVVHGNDGDREKYIDYLKAGSSAYP
LDVISKAGVNMASGEYLTAAFDLFERRLTELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=541219 JW886_RS08145 WP_205871818.1 1644497..1646302(-) (pepF) [Lactococcus taiwanensis strain K_LL004]
ATGGCTAAAGAAAGAAGTGAAATTCAAGAAGCGCATACATGGGACTTATCCACCATTTTTGCGACTGACGAAGCTTGGGA
AAAAGAATTAGAACATGTGAAACAGAGTGTCGAAAATTCTGGGGAACGCTTTTCGGGACATTTGCTTGATTCGGCACAGA
GTCTTTTAAAGATAACAGAAGTTATGCTAGAATTGTCTCAAAAGGTTGAGAAACTATATGTTTATGCCTCTATGAAGAAT
GATCAGGATACACGTGTAGCGAAATATCAAGAATATCAATCCAAGGCATCAAATTTATATGCGAAGTTTGGGGAAGCCTT
CGCTTTTTACGAACCTGAATTTTTGACTTTACAACCCAGTCAATTGGATGAAATGATGGGGATAGCACCAGCTTTACAAG
CTTATCAACATATGTTTGAACGCCTATTTGCTAAAAAACAACATATTCTTAGCCCTAAGGAAGAAAAATTGTTGGCTTCT
GCGAGTGAAATTTTTGGGAGTGCTTCAGAAACTTTCGAAATCTTTGATAATGCTGACATTACCTTTCCTAAGGTGAAAAA
CGAAGAGGGTGAACAAGTTCAATTAACACATGGCAACTTCATTACTTTAATGGAGAGCAAAGATAGATCAGTTCGTAAAG
CCGCTTACCAGGCACTATACAGCCATTATGAACAATTTCAACACACCTATGCAAAAACACTACAAACAAACGTGAAAGTT
CATAATTTTAATGCTCAAATTAGAGGTTATCATTCTGCACGTGAAGCTGCTTTAGCGCGTGATTTTATCCCTGAGCGCGT
ATATGATATTCTGATTGAAGAGATAAATCAAGCTCTTCCACTACTGCATCGATATATGAAACTCCGTCAAACCGTTCTGC
AACTACCAGACCTTAAAATGTATGATGTTTATACACCGCTGTCCAAATTGGACTATAAATTTAATTACAAGGAAGGGGTA
GAAAAGGCAAAAGAAGTTCTAGCGATTTTTGGTAACGAATATCGTAGACGGGTAGAAAGTGCCTTCAAAGAACGATGGAT
TGATGTCGAAGAAAATATCGGAAAGCGTTCAGGTGCTTATTCTGGAGGTTCTTATGATACCAAGGCTTTTATGTTATTGA
ATTGGCAAGAAACATTAGATGATTTGTTCACCTTAGTTCATGAAATGGGCCATTCAATGCACAGTACTTTTACTCGAGAA
AATCAACCTTATGTATACGGAGAATATCCAATCTTTCTTGCGGAGATAGCATCAACTACTAATGAAAATATTTTAACAGA
GACTCTATTGAAAGAAAGCGAAGACGATAAAGAACGTTTTGCTTTACTTAACCACTGGCTAGATAGTTTTAAAGGAACAG
TATTTCGTCAAAGTCAGTTTGCAGAGTTTGAGCAACTTATTCATGAACAAGATGCAAGGGGAGAAGTGCTTACGAGTGAA
TATCTTAACCGTTGTTACGCAGAACTTAATGAGAAATATTACGGTCTTTTAGCTGATGAAAATAAAGAAATACAGTATGA
GTGGGCTAGAATTCCGCACTTTTACTATGATTTTTACGTTTTTCAATATGCAACGGGATTTGCAGCTGCAAGTTACTTAG
CAGAAAAAGTTGTGCACGGTAATGATGGAGATCGTGAAAAATATATTGATTATTTGAAAGCAGGGTCATCTGCTTATCCC
CTTGATGTCATCTCAAAGGCCGGCGTTAATATGGCTTCAGGAGAATATCTAACCGCAGCTTTTGATTTATTCGAACGTCG
TTTAACTGAACTAGAAAAATTAGTAGAAAAAGGAGTACATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.725

100

0.647