Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JW886_RS00640 Genome accession   NZ_CP070872
Coordinates   124392..124889 (-) Length   165 a.a.
NCBI ID   WP_075525978.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119392..129889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS00615 (JW886_00615) gnd 120779..121702 (-) 924 WP_205872466.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  JW886_RS00620 (JW886_00620) - 121905..122753 (+) 849 WP_075525974.1 MurR/RpiR family transcriptional regulator -
  JW886_RS00625 (JW886_00625) - 122790..123098 (+) 309 WP_075525975.1 DUF960 domain-containing protein -
  JW886_RS00630 (JW886_00630) - 123159..123944 (-) 786 WP_205872050.1 metallophosphoesterase -
  JW886_RS00635 (JW886_00635) rpsR 124103..124348 (-) 246 WP_075525977.1 30S ribosomal protein S18 -
  JW886_RS00640 (JW886_00640) ssb 124392..124889 (-) 498 WP_075525978.1 single-stranded DNA-binding protein Machinery gene
  JW886_RS00645 (JW886_00645) rpsF 124914..125207 (-) 294 WP_075525979.1 30S ribosomal protein S6 -
  JW886_RS00650 (JW886_00650) - 125443..126297 (-) 855 WP_075525980.1 undecaprenyl-diphosphate phosphatase -
  JW886_RS00655 (JW886_00655) - 126814..128274 (+) 1461 WP_200407745.1 amino acid permease -
  JW886_RS00660 (JW886_00660) - 128309..128725 (-) 417 WP_205872051.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18166.99 Da        Isoelectric Point: 5.2279

>NTDB_id=541194 JW886_RS00640 WP_075525978.1 124392..124889(-) (ssb) [Lactococcus taiwanensis strain K_LL004]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSTGSYSAPSQSTTNSRPQTNNNTATPNFGRDADPFGGSPMEISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=541194 JW886_RS00640 WP_075525978.1 124392..124889(-) (ssb) [Lactococcus taiwanensis strain K_LL004]
ATGATTAACAATGTAGTATTAGTGGGACGCATTACACGCGATCCTGAACTTCGTTATACCCCACAAAATCAAGCTGTTGC
TACTTTCTCATTGGCGGTTAATCGTCAATTTAAGAACGCAAATGGCGAACGTGAGGCTGATTTTATTAACTGTGTGATCT
GGCGCCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAAGGAGCATTGATCGGAGTAACTGGTCGTATCCAAACGCGC
AATTATGAAAATCAACAAGGCCAACGGGTTTATGTGACGGAAGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTCGTTC
GGCTCGTGAAGGTATGGGCGGTGGAACTTCTACTGGTTCATATTCTGCACCAAGCCAATCTACAACTAATTCTCGACCAC
AAACGAATAATAATACCGCTACTCCGAATTTCGGACGTGATGCTGATCCATTTGGTGGCTCACCAATGGAAATTTCGGAT
GATGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

64.242

0.376
  ssb Glaesserella parasuis strain SC1401

33.149

100

0.364
  ssb Neisseria meningitidis MC58

33.898

100

0.364