Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   JW886_RS00410 Genome accession   NZ_CP070872
Coordinates   71842..73062 (+) Length   406 a.a.
NCBI ID   WP_205872031.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 66842..78062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS00385 (JW886_00385) - 67806..68609 (-) 804 WP_075525584.1 phosphatidate cytidylyltransferase -
  JW886_RS00390 (JW886_00390) - 68609..69343 (-) 735 WP_075525583.1 isoprenyl transferase -
  JW886_RS00395 (JW886_00395) yajC 69845..70171 (-) 327 WP_075525582.1 preprotein translocase subunit YajC -
  JW886_RS00400 (JW886_00400) - 70253..70963 (-) 711 WP_200407585.1 DNA alkylation repair protein -
  JW886_RS00405 (JW886_00405) rlmH 70981..71460 (-) 480 WP_205872030.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  JW886_RS00410 (JW886_00410) htrA 71842..73062 (+) 1221 WP_205872031.1 S1C family serine protease Regulator
  JW886_RS00415 (JW886_00415) - 73183..74181 (+) 999 WP_075525579.1 glycosyltransferase -
  JW886_RS00420 (JW886_00420) - 74240..75580 (+) 1341 WP_200407588.1 glycosyltransferase family 4 protein -
  JW886_RS00425 (JW886_00425) - 75689..75913 (+) 225 WP_075525577.1 YkuJ family protein -
  JW886_RS00430 (JW886_00430) - 76021..77034 (+) 1014 WP_205872032.1 hypothetical protein -
  JW886_RS00435 (JW886_00435) - 77087..77839 (-) 753 WP_075525660.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 41602.83 Da        Isoelectric Point: 4.6749

>NTDB_id=541191 JW886_RS00410 WP_205872031.1 71842..73062(+) (htrA) [Lactococcus taiwanensis strain K_LL004]
MAKGNLGKLLLTGVVGGAIALGGSAIYQTTTNQNGTSSSNTTSTKVSNVSVNVSTDVTAAIKKVSGSVVSVMNYQKQNSS
DDFSSIFGNKSSSASSDSLQLASEGSGVIYKKDGDSAYVVTNYHVIASNDSLDILLSGGQKVSAKVVGYDEYTDLAVLKI
SSEHVKDVATFADSSKLTVGEPTIAVGSPLGSQFANTATEGILSATSRQVTLSQENGQTTNINAIQTDAAINPGNSGGAL
INIDGQVIGITQSKLTTTEDGSTSVEGMGFAIPSNDVVNIINKLESDGKVSRPALGIRMVDLSDLSTNDSSQLNLPSSVT
GGVVVYSVQSGMPAATAGLKAGDVITKVGDTSVTSSTDLQSALYSHNVNDTVKVTYYRDGKSHTANIKLDKTTSELDTNS
SSSSSN

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=541191 JW886_RS00410 WP_205872031.1 71842..73062(+) (htrA) [Lactococcus taiwanensis strain K_LL004]
ATGGCTAAAGGTAATCTAGGAAAATTGCTTTTGACAGGTGTTGTGGGAGGTGCTATTGCTCTAGGAGGTAGTGCCATCTA
TCAAACGACCACTAATCAAAATGGAACGAGCTCAAGTAACACAACCAGTACAAAAGTAAGCAATGTTTCAGTGAATGTCA
GTACAGATGTGACAGCAGCAATCAAGAAAGTTTCAGGTTCTGTTGTATCCGTCATGAATTATCAAAAGCAAAACAGTTCT
GATGATTTCAGCTCTATTTTTGGCAATAAAAGTTCAAGCGCCTCATCTGATAGTCTTCAGTTAGCAAGTGAGGGTTCCGG
GGTTATCTACAAGAAAGATGGAGACTCCGCCTATGTGGTAACAAACTACCACGTTATTGCGAGCAATGATTCTCTGGATA
TCTTACTCTCAGGCGGACAAAAGGTAAGTGCTAAGGTAGTAGGTTACGATGAATATACAGACCTTGCTGTACTAAAAATT
AGCTCAGAACATGTGAAAGACGTAGCAACTTTTGCAGATTCTAGCAAGTTGACAGTGGGTGAACCGACCATTGCAGTCGG
CTCACCTCTAGGAAGTCAATTTGCCAATACCGCAACAGAAGGGATACTATCTGCCACAAGTCGCCAAGTAACTCTCTCTC
AAGAGAATGGGCAAACGACTAATATAAATGCTATTCAAACAGATGCAGCAATCAATCCAGGGAATTCTGGGGGAGCGCTT
ATCAACATTGATGGTCAAGTAATTGGGATTACCCAAAGTAAACTGACAACTACAGAAGATGGCTCAACAAGTGTCGAAGG
CATGGGATTCGCTATCCCTTCTAACGATGTAGTAAATATTATTAATAAGTTGGAATCCGATGGCAAAGTTTCCCGCCCTG
CCTTGGGTATCCGAATGGTTGATTTGTCTGACTTATCAACTAATGACAGCTCTCAACTTAACTTACCAAGTAGTGTCACA
GGTGGGGTCGTGGTTTATTCTGTACAATCAGGTATGCCTGCTGCTACAGCTGGCCTGAAAGCGGGGGATGTAATTACTAA
GGTTGGGGATACTTCCGTTACTTCATCTACCGATTTACAAAGTGCTCTTTATTCTCATAATGTCAATGATACTGTCAAAG
TGACTTATTATCGCGACGGAAAATCACATACTGCTAATATTAAGTTAGACAAGACAACAAGTGAACTTGATACCAACAGT
TCAAGCTCGTCAAGCAACTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(293-389)

Trypsin-like peptidase domain (Trypsin_2)

(105-250)

Peptidase family M50 (Peptidase_M50)

(252-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

55.102

96.552

0.532
  htrA Streptococcus mitis NCTC 12261

55.145

93.35

0.515
  htrA Streptococcus mutans UA159

55.22

89.655

0.495
  htrA Streptococcus pneumoniae TIGR4

58.065

83.99

0.488
  htrA Streptococcus pneumoniae D39

58.065

83.99

0.488
  htrA Streptococcus pneumoniae Rx1

58.065

83.99

0.488
  htrA Streptococcus pneumoniae R6

58.065

83.99

0.488