Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JW980_RS15785 Genome accession   NZ_CP070866
Coordinates   3197769..3199256 (+) Length   495 a.a.
NCBI ID   WP_205667319.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3192769..3204256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS15760 (JW980_15760) ribD 3193672..3194775 (-) 1104 WP_205667318.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  JW980_RS15765 (JW980_15765) nrdR 3194790..3195248 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  JW980_RS15770 (JW980_15770) - 3195400..3196803 (-) 1404 WP_010325684.1 ammonium transporter -
  JW980_RS15775 (JW980_15775) glnK 3196863..3197201 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  JW980_RS15780 (JW980_15780) - 3197476..3197703 (+) 228 WP_004692854.1 accessory factor UbiK family protein -
  JW980_RS15785 (JW980_15785) comM 3197769..3199256 (+) 1488 WP_205667319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JW980_RS15790 (JW980_15790) - 3199328..3200071 (-) 744 WP_205667320.1 TorF family putative porin -
  JW980_RS15795 (JW980_15795) - 3200418..3201188 (-) 771 WP_205667321.1 TorF family putative porin -
  JW980_RS15800 (JW980_15800) - 3201648..3202940 (+) 1293 WP_159153618.1 OprD family outer membrane porin -
  JW980_RS15805 (JW980_15805) ppa 3203044..3203568 (-) 525 WP_004692877.1 inorganic diphosphatase -
  JW980_RS15810 (JW980_15810) - 3203686..3204090 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54261.17 Da        Isoelectric Point: 8.4016

>NTDB_id=541169 JW980_RS15785 WP_205667319.1 3197769..3199256(+) (comM) [Acinetobacter johnsonii strain XY27]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPVQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYKWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRGQSN

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=541169 JW980_RS15785 WP_205667319.1 3197769..3199256(+) (comM) [Acinetobacter johnsonii strain XY27]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGTTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCACCCGCAGACCTGCCCAAAGACAGTTCACGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGTGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGCACTTTAAGTATTGCAATTGCCTGCCAGCAAGCTGGAC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAGGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCGGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACTCTATTGGCTTCACGTTTAGCCAGTATTCTACCGCCCTTGAATACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACGGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCTGCAATGAATCCTTGTCCCTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCCGAGGCGATTAAGCGCTACCAAAACCGTATTTCCGGGC
CTTTGTTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATAAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGGCAAGCAGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGTATTTTAAGGGTGGCTAGAACCATTGCAGATTTGGCCCAGTCAGAGCATATCCAA
ACGGGACATTTGACCGAGGCACTGTCCTATCGGGGACAAAGCAACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio campbellii strain DS40M4

51.111

100

0.511
  comM Vibrio cholerae strain A1552

50.905

100

0.511
  comM Legionella pneumophila str. Paris

50.605

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467