Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   JW980_RS12900 Genome accession   NZ_CP070866
Coordinates   2595611..2596135 (-) Length   174 a.a.
NCBI ID   WP_205667033.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590611..2601135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS12885 (JW980_12885) - 2591229..2593166 (+) 1938 WP_205667030.1 hypothetical protein -
  JW980_RS12890 (JW980_12890) - 2593163..2595220 (+) 2058 WP_205667031.1 hypothetical protein -
  JW980_RS12895 (JW980_12895) - 2595224..2595580 (+) 357 WP_205667032.1 hypothetical protein -
  JW980_RS12900 (JW980_12900) comP 2595611..2596135 (-) 525 WP_205667033.1 pilin Machinery gene
  JW980_RS12905 (JW980_12905) - 2596491..2596661 (+) 171 WP_171503516.1 hypothetical protein -
  JW980_RS12910 (JW980_12910) - 2597228..2597959 (+) 732 Protein_2532 Fic family protein -
  JW980_RS12915 (JW980_12915) ribA 2598463..2598894 (+) 432 Protein_2533 GTP cyclohydrolase II RibA -
  JW980_RS12920 (JW980_12920) - 2598914..2599384 (-) 471 WP_005399975.1 IS5/IS1182 family transposase -
  JW980_RS12925 (JW980_12925) - 2599332..2599727 (-) 396 WP_205667034.1 transposase family protein -
  JW980_RS12930 (JW980_12930) - 2599817..2599984 (+) 168 Protein_2536 GTP cyclohydrolase II -
  JW980_RS12935 (JW980_12935) - 2600151..2601122 (+) 972 Protein_2537 IS481 family transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 17541.10 Da        Isoelectric Point: 7.5884

>NTDB_id=541154 JW980_RS12900 WP_205667033.1 2595611..2596135(-) (comP) [Acinetobacter johnsonii strain XY27]
MNAQKGFTLIELMIVVAIIGILAAIALPAYQDYTIRARVSEALSVAGGAKTTVAENITANGGVLPAATANGGKGACAGVS
IFDAKAKTGASNVGNVEKLSCTAATGAIVVKMNEKGKGVELTLTPTADTAAKDAEGENAAVQAKNNPGIAWQCTTTEASF
KYVPAECRNLAPTV

Nucleotide


Download         Length: 525 bp        

>NTDB_id=541154 JW980_RS12900 WP_205667033.1 2595611..2596135(-) (comP) [Acinetobacter johnsonii strain XY27]
ATGAACGCTCAAAAAGGCTTTACATTGATCGAGCTGATGATTGTAGTCGCTATTATTGGTATTTTGGCCGCAATTGCTCT
TCCCGCTTATCAGGATTATACAATCCGCGCACGTGTTTCTGAAGCACTTAGTGTTGCAGGTGGCGCAAAAACAACAGTAG
CAGAAAATATTACTGCAAATGGGGGGGTACTACCTGCTGCAACAGCAAATGGTGGAAAAGGTGCATGTGCTGGGGTTAGC
ATATTTGATGCTAAAGCTAAAACTGGCGCTAGCAATGTAGGTAATGTGGAAAAACTTTCATGCACCGCTGCAACAGGTGC
TATTGTTGTTAAAATGAATGAAAAAGGTAAGGGGGTTGAATTAACTTTGACTCCTACTGCTGATACTGCTGCAAAAGATG
CAGAGGGTGAGAATGCTGCTGTTCAAGCTAAAAACAACCCAGGTATCGCTTGGCAATGTACAACTACTGAAGCATCATTT
AAATATGTTCCAGCTGAATGCCGTAATCTTGCCCCTACTGTTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50

97.701

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

40.556

100

0.42
  pilA2 Legionella pneumophila str. Paris

43.03

94.828

0.408
  pilA2 Legionella pneumophila strain ERS1305867

42.424

94.828

0.402
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.964

95.402

0.391