Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   JW980_RS01670 Genome accession   NZ_CP070866
Coordinates   348668..349192 (-) Length   174 a.a.
NCBI ID   WP_205667033.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343668..354192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS01655 (JW980_01655) - 344286..346223 (+) 1938 WP_205667030.1 hypothetical protein -
  JW980_RS01660 (JW980_01660) - 346220..348277 (+) 2058 WP_205667031.1 hypothetical protein -
  JW980_RS01665 (JW980_01665) - 348281..348637 (+) 357 WP_205667032.1 hypothetical protein -
  JW980_RS01670 (JW980_01670) comP 348668..349192 (-) 525 WP_205667033.1 pilin Machinery gene
  JW980_RS01675 (JW980_01675) - 349548..349718 (+) 171 WP_171503516.1 hypothetical protein -
  JW980_RS01680 (JW980_01680) - 349962..350399 (+) 438 WP_205667524.1 pilin -
  JW980_RS01685 (JW980_01685) - 350488..350748 (+) 261 WP_205667525.1 DUF1488 family protein -
  JW980_RS01690 (JW980_01690) tfpZ 350780..351514 (+) 735 WP_205667526.1 TfpX/TfpZ family type IV pilin accessory protein -
  JW980_RS01695 (JW980_01695) bfr 351571..352035 (-) 465 WP_205667527.1 bacterioferritin -
  JW980_RS01700 (JW980_01700) - 352287..352481 (-) 195 WP_159151563.1 bacterioferritin-associated ferredoxin -
  JW980_RS01705 (JW980_01705) - 352636..353019 (-) 384 WP_004691470.1 RidA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 17541.10 Da        Isoelectric Point: 7.5884

>NTDB_id=541137 JW980_RS01670 WP_205667033.1 348668..349192(-) (comP) [Acinetobacter johnsonii strain XY27]
MNAQKGFTLIELMIVVAIIGILAAIALPAYQDYTIRARVSEALSVAGGAKTTVAENITANGGVLPAATANGGKGACAGVS
IFDAKAKTGASNVGNVEKLSCTAATGAIVVKMNEKGKGVELTLTPTADTAAKDAEGENAAVQAKNNPGIAWQCTTTEASF
KYVPAECRNLAPTV

Nucleotide


Download         Length: 525 bp        

>NTDB_id=541137 JW980_RS01670 WP_205667033.1 348668..349192(-) (comP) [Acinetobacter johnsonii strain XY27]
ATGAACGCTCAAAAAGGCTTTACATTGATCGAGCTGATGATTGTAGTCGCTATTATTGGTATTTTGGCCGCAATTGCTCT
TCCCGCTTATCAGGATTATACAATCCGCGCACGTGTTTCTGAAGCACTTAGTGTTGCAGGTGGCGCAAAAACAACAGTAG
CAGAAAATATTACTGCAAATGGGGGGGTACTACCTGCTGCAACAGCAAATGGTGGAAAAGGTGCATGTGCTGGGGTTAGC
ATATTTGATGCTAAAGCTAAAACTGGCGCTAGCAATGTAGGTAATGTGGAAAAACTTTCATGCACCGCTGCAACAGGTGC
TATTGTTGTTAAAATGAATGAAAAAGGTAAGGGGGTTGAATTAACTTTGACTCCTACTGCTGATACTGCTGCAAAAGATG
CAGAGGGTGAGAATGCTGCTGTTCAAGCTAAAAACAACCCAGGTATCGCTTGGCAATGTACAACTACTGAAGCATCATTT
AAATATGTTCCAGCTGAATGCCGTAATCTTGCCCCTACTGTTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

50

97.701

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

40.556

100

0.42
  pilA2 Legionella pneumophila str. Paris

43.03

94.828

0.408
  pilA2 Legionella pneumophila strain ERS1305867

42.424

94.828

0.402
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.964

95.402

0.391