Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JW975_RS17705 Genome accession   NZ_CP070865
Coordinates   3984316..3985845 (+) Length   509 a.a.
NCBI ID   WP_011920159.1    Uniprot ID   -
Organism   Shewanella putrefaciens strain XY07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3979316..3990845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW975_RS17690 (JW975_17690) - 3979472..3981886 (+) 2415 WP_011791010.1 TonB-dependent receptor domain-containing protein -
  JW975_RS17695 (JW975_17695) - 3982247..3983371 (-) 1125 WP_011920157.1 DUF1963 domain-containing protein -
  JW975_RS17700 (JW975_17700) sodC 3983635..3984156 (+) 522 WP_011920158.1 superoxide dismutase family protein -
  JW975_RS17705 (JW975_17705) comM 3984316..3985845 (+) 1530 WP_011920159.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JW975_RS17710 (JW975_17710) - 3985947..3986843 (+) 897 WP_011791014.1 acyltransferase -
  JW975_RS17715 (JW975_17715) - 3986857..3987801 (+) 945 WP_061782994.1 acyltransferase -
  JW975_RS17720 (JW975_17720) - 3987798..3988304 (-) 507 WP_061782995.1 DUF523 domain-containing protein -
  JW975_RS17725 (JW975_17725) - 3988605..3989372 (+) 768 WP_011791017.1 GntR family transcriptional regulator -
  JW975_RS17730 (JW975_17730) prpB 3989425..3990303 (+) 879 WP_025008187.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55451.80 Da        Isoelectric Point: 7.7920

>NTDB_id=541128 JW975_RS17705 WP_011920159.1 3984316..3985845(+) (comM) [Shewanella putrefaciens strain XY07]
MAIACVNTRASCGVEAPKVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGQIRYCQGLLPAIIAAKRQDNTLILPLENRHDAELVGYQKVFFGSHL
QSLAAFLQGQAPLPELDTHLEWVSEEQSYDSSQCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLP
ALSYEEALEVAAIHSVAGLDIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLR
EPMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDANNRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQA
MAPSETSQDVAKRVRRARDIQLARSGVLNSELTGKQLKLFSGLTDADLIFLEQSVVKLGLSVRSFHRIQRVARTIADLEQ
SPNTERRHLAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=541128 JW975_RS17705 WP_011920159.1 3984316..3985845(+) (comM) [Shewanella putrefaciens strain XY07]
ATGGCAATTGCCTGCGTTAACACTCGAGCCAGTTGCGGGGTTGAAGCCCCAAAAGTCACGGTTGAAGTACATCTTAGTAA
TGGGTTACCTGCATTTAATCTAGTGGGATTACCTGAAGCCTCGGTAAAGGAAGCCCGTGAACGAGTACGTAGCGCACTGA
TCAACGCAGGTTTTGAATTCCCAATGCGCAGAATTACTGTCAATCTCGCGCCGGCAGATTTGCCGAAACAAGGGGGGCGC
TACGATTTACCTATCGCTGTGGGCATACTCGCGGCATCCGAACAAATCCCAGCTAACAGTTTAAAAAATTTAGAATTTGT
GGGTGAACTGGCGCTTTCTGGACAGATTCGTTATTGCCAAGGGCTGCTACCTGCAATTATTGCAGCAAAACGCCAAGACA
ATACTTTAATTTTGCCATTGGAAAATCGTCACGATGCCGAGTTAGTTGGCTATCAAAAGGTATTTTTTGGATCGCACTTA
CAAAGTCTCGCGGCATTTTTACAAGGTCAAGCACCACTACCGGAACTTGATACTCATCTTGAATGGGTAAGCGAAGAACA
ATCCTATGATTCAAGCCAATGCTTAAGCGATGTGATAGGACAATATCAAGCCAAACAAGCACTGGAAATTGCGGCGGCAG
GTAATCATAACCTTTTGATGCTGGGCCCGCCCGGAACTGGAAAAACCATGCTGGCCAGCCGCATGATGGCGCTACTCCCT
GCCTTAAGTTATGAAGAAGCATTAGAAGTTGCCGCTATTCACTCCGTTGCAGGACTCGACATCAAGCCACAAGATTTTTT
AAAACGCCCCTTTAGAGCACCACACCACACAAGTTCATCAATATCCCTCGTGGGTGGCGGAAGTATTCCAAAACCCGGTG
AAATCTCCCTCGCACACCGTGGCGTCTTATTTTTAGATGAAGTTGCTGAATTTCCACGTAAAGTGCTCGACTGCCTACGT
GAGCCTATGGAAACAGGCGAAGTAGTCATTTCCCGCGCCGCCGCTAAACTCACTTTTTTAAGCCGTTTTCAATTAATCGC
CGCCATGAATCCTAGCCCTAGCGGTGATATTGATGCAAATAACCGCGCCACTCCAGATCAAGTACAGCGGTATCTTGCAA
GATTGTCGGGCCCATTTCTCGATAGATTTGATCTCACGATTGAAGTGCCAAAACTACCCGCAGGCACACTCACCCAAGCC
ATGGCGCCGAGCGAAACTAGCCAAGATGTCGCGAAACGAGTTAGGCGCGCAAGGGATATTCAACTGGCTCGCTCAGGAGT
GCTCAACAGTGAACTTACGGGTAAACAGCTTAAACTTTTCAGCGGTCTAACTGATGCAGACCTTATCTTTTTAGAGCAGA
GCGTCGTCAAACTTGGACTTTCTGTGCGTAGCTTTCATCGTATTCAACGAGTCGCCCGCACGATTGCCGATCTAGAGCAG
TCACCCAATACTGAAAGACGTCACTTGGCTCAAGCATTAGGATATCGCGCTATGGATAGGCTGCTTGCGCGTTTATCTCA
GCAATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.778

100

0.568
  comM Vibrio campbellii strain DS40M4

56.385

100

0.564
  comM Haemophilus influenzae Rd KW20

56.213

99.607

0.56
  comM Glaesserella parasuis strain SC1401

55.424

99.607

0.552
  comM Legionella pneumophila str. Paris

47.937

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.937

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.574

97.839

0.426