Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5M_RS12810 Genome accession   NC_018868
Coordinates   2868312..2869799 (-) Length   495 a.a.
NCBI ID   WP_015047936.1    Uniprot ID   K4KNT9
Organism   Simiduia agarivorans SA1 = DSM 21679     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2863312..2874799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5M_RS12800 (M5M_13135) - 2864919..2866331 (-) 1413 WP_162141178.1 ArnT family glycosyltransferase -
  M5M_RS12805 (M5M_13140) - 2866578..2868290 (+) 1713 WP_024330529.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  M5M_RS12810 (M5M_13145) comM 2868312..2869799 (-) 1488 WP_015047936.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5M_RS12815 (M5M_13150) - 2869834..2870049 (-) 216 WP_015047937.1 accessory factor UbiK family protein -
  M5M_RS12820 (M5M_13155) - 2870348..2871004 (+) 657 WP_015047938.1 TorF family putative porin -
  M5M_RS12825 (M5M_13160) - 2871064..2871402 (+) 339 WP_015047939.1 P-II family nitrogen regulator -
  M5M_RS12830 (M5M_13165) - 2871439..2872671 (+) 1233 WP_015047940.1 ammonium transporter -
  M5M_RS12835 (M5M_13170) - 2872841..2873179 (+) 339 WP_015047941.1 P-II family nitrogen regulator -
  M5M_RS12840 (M5M_13175) - 2873232..2873744 (-) 513 WP_015047942.1 DUF523 domain-containing protein -
  M5M_RS12845 (M5M_13180) - 2874143..2874490 (+) 348 WP_015047943.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52864.52 Da        Isoelectric Point: 7.5217

>NTDB_id=54092 M5M_RS12810 WP_015047936.1 2868312..2869799(-) (comM) [Simiduia agarivorans SA1 = DSM 21679]
MSLAIVHTRARVGIDAPLVSVEVHLSNGLPGLAIVGMPETAVRESKDRVRSALINSHFEFPARRITINLAPADLPKEGGR
FDLPIAIGILVASGQLPAKALDTLEFVGELALSGDLRAVPGCLAAVMAAHKAGRTSVVPAGNGPEAALADTPTYVACNLL
QVCACLQARSDWPRACGTAADTHPAPQAELADVRGQPLARRALEIAAAGNHNLLFYGPPGTGKTLLASRLTSILPPLTRD
EALEVALIHSLVSSQPPLGQRPFRHPHHSASAPALVGGGSVPRPGEISLAHKGVLFLDELPEFPRSVLEVLREPLEHGEV
RIARAQTTAVFPCEFQLVAALNPCPCGYAGENRCRCTPDQISRYRGRLSGPLLDRIDMHVPVRALDPAQLRGPSQEESSS
VVAARVLQARQRAQARQGKANQYLSPGELEQHAHLTDAQHSLLGEATESLGLSVRAWHRILRVARTLADLDATDQLEDKH
LCEALGYRTLDRRAG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=54092 M5M_RS12810 WP_015047936.1 2868312..2869799(-) (comM) [Simiduia agarivorans SA1 = DSM 21679]
ATGTCACTCGCCATCGTACACACCCGCGCCCGGGTCGGAATCGACGCCCCGTTGGTCTCGGTGGAAGTCCACCTTTCGAA
TGGCCTGCCTGGTCTCGCCATTGTGGGCATGCCGGAAACCGCCGTGCGGGAAAGCAAAGACCGCGTGCGCAGCGCGCTCA
TCAACAGCCATTTCGAGTTTCCCGCCCGCCGCATCACCATCAACCTGGCGCCGGCCGACTTACCCAAGGAAGGCGGACGT
TTTGACCTGCCCATTGCCATCGGCATTCTGGTGGCCTCCGGGCAATTGCCGGCCAAAGCGCTGGACACGCTGGAATTTGT
TGGCGAGCTCGCCCTGTCCGGTGACCTGCGCGCGGTGCCTGGCTGCCTGGCAGCCGTCATGGCCGCGCACAAGGCCGGTC
GCACCAGTGTGGTGCCGGCCGGAAACGGGCCCGAAGCGGCGTTGGCCGATACCCCCACCTACGTGGCATGCAACCTTTTG
CAGGTATGTGCCTGTCTGCAGGCCCGCAGCGATTGGCCGCGTGCCTGCGGTACCGCTGCAGATACCCACCCCGCGCCACA
GGCGGAACTGGCCGATGTGCGTGGCCAACCGCTGGCCCGGCGCGCGCTGGAAATTGCCGCCGCGGGCAACCATAACCTGC
TGTTTTACGGCCCGCCGGGTACGGGTAAGACCCTGCTGGCCAGTCGTTTGACCAGCATCCTGCCGCCGCTGACCCGCGAT
GAAGCACTGGAAGTCGCGCTGATCCATTCTCTGGTGTCCAGCCAACCACCTCTGGGGCAACGACCTTTCCGGCACCCTCA
TCACAGCGCATCGGCGCCGGCATTGGTGGGCGGCGGTTCGGTGCCAAGGCCCGGCGAAATCTCCCTGGCCCACAAGGGTG
TGTTGTTTCTGGATGAATTGCCCGAGTTCCCGCGCTCGGTGCTGGAAGTATTACGTGAACCGCTGGAGCACGGCGAAGTG
CGCATCGCCCGGGCACAAACCACGGCCGTGTTTCCGTGCGAATTCCAGCTGGTGGCAGCGCTCAATCCCTGCCCCTGCGG
CTATGCCGGCGAAAACCGCTGCCGCTGCACGCCGGATCAGATCAGCCGTTACCGGGGCCGGCTGTCAGGCCCGCTGCTCG
ATCGTATCGATATGCACGTGCCGGTACGGGCGCTGGACCCGGCCCAACTGCGCGGACCCAGCCAGGAAGAAAGCTCATCC
GTCGTGGCTGCGCGGGTGCTGCAGGCCCGCCAACGGGCCCAGGCCAGACAGGGCAAGGCCAATCAATACCTGAGCCCGGG
CGAACTGGAGCAGCACGCCCACCTGACCGATGCACAACATAGCCTGCTGGGCGAGGCAACGGAATCGTTGGGGCTGTCGG
TGCGCGCCTGGCACCGGATACTGCGGGTGGCACGCACACTGGCCGACCTGGACGCCACTGATCAACTGGAAGACAAGCAC
CTGTGCGAAGCACTGGGATACCGCACGCTGGACAGAAGAGCAGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(396-488)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4KNT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.338

100

0.566
  comM Vibrio cholerae strain A1552

55.332

100

0.556
  comM Glaesserella parasuis strain SC1401

54.092

100

0.547
  comM Haemophilus influenzae Rd KW20

53.892

100

0.545
  comM Legionella pneumophila str. Paris

48.515

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.515

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.97

100

0.438

Multiple sequence alignment