Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M5M_RS08810 | Genome accession | NC_018868 |
| Coordinates | 1989475..1989993 (-) | Length | 172 a.a. |
| NCBI ID | WP_015047144.1 | Uniprot ID | K4KIK2 |
| Organism | Simiduia agarivorans SA1 = DSM 21679 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1984475..1994993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5M_RS08795 (M5M_08945) | - | 1986018..1986404 (+) | 387 | WP_015047141.1 | hypothetical protein | - |
| M5M_RS08800 (M5M_08950) | - | 1986391..1987782 (+) | 1392 | WP_015047142.1 | hypothetical protein | - |
| M5M_RS19480 (M5M_08955) | - | 1987824..1989407 (+) | 1584 | WP_015047143.1 | GNAT family N-acetyltransferase | - |
| M5M_RS08810 (M5M_08960) | ssb | 1989475..1989993 (-) | 519 | WP_015047144.1 | single-stranded DNA-binding protein | Machinery gene |
| M5M_RS08815 (M5M_08965) | - | 1990071..1991402 (-) | 1332 | WP_037433989.1 | MFS transporter | - |
| M5M_RS08820 (M5M_08970) | - | 1991636..1992181 (+) | 546 | WP_015047146.1 | hypothetical protein | - |
| M5M_RS08825 (M5M_08975) | - | 1992522..1993166 (+) | 645 | WP_015047147.1 | LuxR C-terminal-related transcriptional regulator | - |
| M5M_RS08830 (M5M_08980) | - | 1993168..1993584 (+) | 417 | WP_015047148.1 | curli production assembly/transport protein CsgE | - |
| M5M_RS08835 (M5M_08985) | - | 1993594..1993992 (+) | 399 | WP_015047149.1 | curli assembly protein CsgF | - |
| M5M_RS08840 (M5M_08995) | - | 1994009..1994878 (+) | 870 | WP_016389319.1 | CsgG/HfaB family protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19358.25 Da Isoelectric Point: 4.9839
>NTDB_id=54084 M5M_RS08810 WP_015047144.1 1989475..1989993(-) (ssb) [Simiduia agarivorans SA1 = DSM 21679]
MARGINKVILVGNLGQDPETKYMPSGGAVTNVSIATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGDMGSGGYEQGGYSAPQQQAPQQRQQPQQNYQQQQQRPQQAQPQQAPN
DGFADFDDDIPF
MARGINKVILVGNLGQDPETKYMPSGGAVTNVSIATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGDMGSGGYEQGGYSAPQQQAPQQRQQPQQNYQQQQQRPQQAQPQQAPN
DGFADFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=54084 M5M_RS08810 WP_015047144.1 1989475..1989993(-) (ssb) [Simiduia agarivorans SA1 = DSM 21679]
ATGGCAAGAGGCATTAATAAAGTCATCCTGGTAGGTAATCTCGGCCAGGACCCGGAAACCAAGTACATGCCCAGTGGTGG
CGCGGTCACTAACGTAAGTATCGCAACCTCTGAAACCTGGAAGGATAAGCAGACCGGCCAGCCCCAGGAGCGCACCGAAT
GGCATCGCGTGGTGTTTTTCAATCGCCTGGCCGAAATAGCGGGTGAGTACCTGAAAAAGGGCAGCAAGGTCTATGTCGAA
GGCAGTCTGCGTACGCGTAAATGGCAGGGGCAGGACGGGCAGGACCGTTACACCACCGAAATTGTGGCCAGCGAAATGCA
GATGTTGGATGGCCGTGGCGACATGGGTTCAGGCGGCTACGAACAAGGCGGCTACTCTGCACCTCAGCAGCAGGCACCAC
AACAGCGCCAGCAACCGCAGCAGAATTACCAGCAGCAACAGCAGCGCCCGCAGCAGGCTCAGCCTCAGCAGGCCCCGAAT
GATGGCTTTGCTGATTTTGACGACGATATTCCTTTCTAA
ATGGCAAGAGGCATTAATAAAGTCATCCTGGTAGGTAATCTCGGCCAGGACCCGGAAACCAAGTACATGCCCAGTGGTGG
CGCGGTCACTAACGTAAGTATCGCAACCTCTGAAACCTGGAAGGATAAGCAGACCGGCCAGCCCCAGGAGCGCACCGAAT
GGCATCGCGTGGTGTTTTTCAATCGCCTGGCCGAAATAGCGGGTGAGTACCTGAAAAAGGGCAGCAAGGTCTATGTCGAA
GGCAGTCTGCGTACGCGTAAATGGCAGGGGCAGGACGGGCAGGACCGTTACACCACCGAAATTGTGGCCAGCGAAATGCA
GATGTTGGATGGCCGTGGCGACATGGGTTCAGGCGGCTACGAACAAGGCGGCTACTCTGCACCTCAGCAGCAGGCACCAC
AACAGCGCCAGCAACCGCAGCAGAATTACCAGCAGCAACAGCAGCGCCCGCAGCAGGCTCAGCCTCAGCAGGCCCCGAAT
GATGGCTTTGCTGATTTTGACGACGATATTCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.674 |
100 |
0.628 |
| ssb | Glaesserella parasuis strain SC1401 |
54.144 |
100 |
0.57 |
| ssb | Neisseria meningitidis MC58 |
49.133 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
49.133 |
100 |
0.494 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.571 |
100 |
0.372 |