Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6J48_RS10790 Genome accession   NZ_CP070518
Coordinates   2292017..2292826 (+) Length   269 a.a.
NCBI ID   WP_205468452.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287017..2297826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10760 (I6J48_10760) rpoZ 2287768..2288046 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J48_RS10765 (I6J48_10765) gmk 2288119..2288748 (-) 630 WP_003653783.1 guanylate kinase -
  I6J48_RS10770 (I6J48_10770) ispH 2288871..2289821 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J48_RS10775 (I6J48_10775) fimU 2289992..2290465 (+) 474 WP_205468450.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6J48_RS10780 (I6J48_10780) pilV 2290459..2291019 (+) 561 WP_198497025.1 type IV pilus modification protein PilV Machinery gene
  I6J48_RS10785 (I6J48_10785) pilW 2291019..2292020 (+) 1002 WP_205468451.1 PilW family protein Machinery gene
  I6J48_RS10790 (I6J48_10790) pilX 2292017..2292826 (+) 810 WP_205468452.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J48_RS10795 (I6J48_10795) pilY1 2292838..2296683 (+) 3846 WP_205468453.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J48_RS10800 (I6J48_10800) pilY2 2296694..2297176 (+) 483 WP_205468454.1 type IV pilin protein Machinery gene
  I6J48_RS10805 (I6J48_10805) pilE 2297173..2297598 (+) 426 WP_017390964.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28546.36 Da        Isoelectric Point: 7.2645

>NTDB_id=540497 I6J48_RS10790 WP_205468452.1 2292017..2292826(+) (pilX) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MTHLIHKSRSKEKGATLIVVLIILLVVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPISTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSAQRIRVITTAFLPVYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=540497 I6J48_RS10790 WP_205468452.1 2292017..2292826(+) (pilX) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACTCTTATTGTTGTGCTTATTATTTTATTGGTTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTAGCTATTGTTTCTTTAAAAGTTGCTACTAATAGCCAAGTTAGCCAATTAA
ATTTTCAATCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCTTAACTAATATTACTAATGTGATT
GGTGCCGCGCTCAAAGAGCACGAAAGTAACCCTGGCGCAGAATACAACTTTTGTTATAAGCCTATTTCTACGTCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTCGTCGAAGATGGGGGAGTGGCAG
GTTTTTGTGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCGGTGGTTACACAAGTTGCCGTAAGTATTCCAACAGAT
GCTGCAAGTGATATTCCTGGTTCAAATTTACCACGGGGAACAAACACCTCTGAAGGTACACAACTACCTAAAAGCATGCT
GTCTGCACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGTCTATGCATCTACCTCTATAGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACTGCATTAACGGCTAAGCAAACATTGGCGGAGTGT
TTGGCTAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911