Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LLZ90_RS00410 Genome accession   NZ_CP086129
Coordinates   64842..65840 (+) Length   332 a.a.
NCBI ID   WP_001902090.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59842..70840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ90_RS00395 (LLZ90_00395) - 60869..62260 (+) 1392 WP_001079797.1 hypothetical protein -
  LLZ90_RS00400 (LLZ90_00400) purB 62282..63580 (+) 1299 WP_000572890.1 adenylosuccinate lyase -
  LLZ90_RS00405 (LLZ90_00405) comR 63733..64641 (+) 909 WP_000912095.1 XRE family transcriptional regulator Regulator
  LLZ90_RS00410 (LLZ90_00410) ruvB 64842..65840 (+) 999 WP_001902090.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LLZ90_RS00415 (LLZ90_00415) - 65992..66429 (+) 438 WP_000754818.1 low molecular weight protein-tyrosine-phosphatase -
  LLZ90_RS00420 (LLZ90_00420) - 66436..66816 (+) 381 WP_000787702.1 membrane protein -
  LLZ90_RS00425 (LLZ90_00425) - 66813..68591 (+) 1779 WP_001220907.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37573.85 Da        Isoelectric Point: 4.4654

>NTDB_id=540496 LLZ90_RS00410 WP_001902090.1 64842..65840(+) (ruvB) [Streptococcus agalactiae strain MIN-181]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQQGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=540496 LLZ90_RS00410 WP_001902090.1 64842..65840(+) (ruvB) [Streptococcus agalactiae strain MIN-181]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTTTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATTTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAACGATTTGAC
AGAAATTATTGAGCGTACAGCAGATATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAACAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATACGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

89.759

100

0.898
  ruvB Streptococcus pneumoniae R6

89.458

100

0.895
  ruvB Streptococcus pneumoniae D39

89.458

100

0.895
  ruvB Bacillus subtilis subsp. subtilis str. 168

59.819

99.699

0.596
  ruvB Helicobacter pylori 26695

53.074

93.072

0.494
  ruvB Synechocystis sp. PCC 6803

50.479

94.277

0.476