Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6J48_RS10800 Genome accession   NZ_CP070518
Coordinates   2296694..2297176 (+) Length   160 a.a.
NCBI ID   WP_205468454.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2291694..2302176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10790 (I6J48_10790) pilX 2292017..2292826 (+) 810 WP_205468452.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J48_RS10795 (I6J48_10795) pilY1 2292838..2296683 (+) 3846 WP_205468453.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J48_RS10800 (I6J48_10800) pilY2 2296694..2297176 (+) 483 WP_205468454.1 type IV pilin protein Machinery gene
  I6J48_RS10805 (I6J48_10805) pilE 2297173..2297598 (+) 426 WP_017390964.1 type IV pilin protein Machinery gene
  I6J48_RS10810 (I6J48_10810) rpsP 2297746..2297997 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6J48_RS10815 (I6J48_10815) rimM 2298018..2298566 (+) 549 WP_003653772.1 ribosome maturation factor RimM -
  I6J48_RS10820 (I6J48_10820) trmD 2298609..2299364 (+) 756 WP_205468455.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6J48_RS10825 (I6J48_10825) rplS 2299584..2299952 (+) 369 WP_003653770.1 50S ribosomal protein L19 -
  I6J48_RS10830 (I6J48_10830) - 2300006..2300947 (-) 942 WP_080028358.1 triacylglycerol lipase -
  I6J48_RS10835 (I6J48_10835) - 2301065..2302096 (-) 1032 WP_205468456.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17578.84 Da        Isoelectric Point: 8.1047

>NTDB_id=540499 I6J48_RS10800 WP_205468454.1 2296694..2297176(+) (pilY2) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYNRRATASATKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTAGNLLTNGAANGQTWVIKATTTDSKNFNFIAKNSDLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=540499 I6J48_RS10800 WP_205468454.1 2296694..2297176(+) (pilY2) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAATAAATACTATATTCTGAGGTTTAATCAGGGTGTTACCTTGATTGAACTCATGGTTGTCATAGTGATTGTCGCTAT
TTTTGCCTCGATTGCTATCCCTTCATATCAAAGTTATAACCGTAGAGCGACTGCCTCTGCTACTAAAGGTGAAATTCTAA
AATTGGCAGAACAATTGGAACGGCATAAATCCAAGAATTTTACCTATAGAGGATTTACCACCACATCTGTAACGTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGACACAACAGCAGGAAATTTATTGACGAATGGTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAAAAATTTTAATTTTATTGCTAAAAATTCAGATTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

91.875

100

0.919
  comE Acinetobacter baylyi ADP1

39.535

100

0.425