Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LLZ90_RS00265 Genome accession   NZ_CP086129
Coordinates   32464..33225 (+) Length   253 a.a.
NCBI ID   WP_001266270.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MIN-181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27464..38225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ90_RS00250 (LLZ90_00250) pcsB 28798..30099 (+) 1302 WP_000746069.1 peptidoglycan hydrolase PcsB -
  LLZ90_RS00255 (LLZ90_00255) - 30223..31191 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  LLZ90_RS00260 (LLZ90_00260) - 31299..32474 (+) 1176 WP_000171458.1 pyridoxal phosphate-dependent aminotransferase -
  LLZ90_RS00265 (LLZ90_00265) recO 32464..33225 (+) 762 WP_001266270.1 DNA repair protein RecO Machinery gene
  LLZ90_RS00270 (LLZ90_00270) - 33288..34166 (+) 879 WP_234528171.1 CPBP family intramembrane glutamic endopeptidase -
  LLZ90_RS00275 (LLZ90_00275) plsX 34244..35236 (+) 993 WP_000717412.1 phosphate acyltransferase PlsX -
  LLZ90_RS00280 (LLZ90_00280) - 35247..35486 (+) 240 WP_000085642.1 acyl carrier protein -
  LLZ90_RS00285 (LLZ90_00285) purC 35610..36317 (+) 708 WP_000184493.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29656.09 Da        Isoelectric Point: 6.4093

>NTDB_id=540494 LLZ90_RS00265 WP_001266270.1 32464..33225(+) (recO) [Streptococcus agalactiae strain MIN-181]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLEPNMLHLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=540494 LLZ90_RS00265 WP_001266270.1 32464..33225(+) (recO) [Streptococcus agalactiae strain MIN-181]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
ACCTAATATGCTGCACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625