Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6J48_RS10775 Genome accession   NZ_CP070518
Coordinates   2289992..2290465 (+) Length   157 a.a.
NCBI ID   WP_205468450.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2284992..2295465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10750 (I6J48_10750) - 2285454..2287559 (-) 2106 WP_004639700.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  I6J48_RS10760 (I6J48_10760) rpoZ 2287768..2288046 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J48_RS10765 (I6J48_10765) gmk 2288119..2288748 (-) 630 WP_003653783.1 guanylate kinase -
  I6J48_RS10770 (I6J48_10770) ispH 2288871..2289821 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J48_RS10775 (I6J48_10775) fimU 2289992..2290465 (+) 474 WP_205468450.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6J48_RS10780 (I6J48_10780) pilV 2290459..2291019 (+) 561 WP_198497025.1 type IV pilus modification protein PilV Machinery gene
  I6J48_RS10785 (I6J48_10785) pilW 2291019..2292020 (+) 1002 WP_205468451.1 PilW family protein Machinery gene
  I6J48_RS10790 (I6J48_10790) pilX 2292017..2292826 (+) 810 WP_205468452.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16936.47 Da        Isoelectric Point: 7.7943

>NTDB_id=540494 I6J48_RS10775 WP_205468450.1 2289992..2290465(+) (fimU) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MRGIISQDGFTLVELMVTIAVMAIITMTAAPSMSNLLESKRLDENQRDLINTLSEAKSQAILGRQDVSINLNSTASNSPT
SLNWKTTSNNTLELKNIAADGTQSSLTATTLTFNANGVVSNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=540494 I6J48_RS10775 WP_205468450.1 2289992..2290465(+) (fimU) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAGGGGAATTATTTCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTAATGGCTATTATTACGAT
GACGGCTGCGCCGTCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGAAAATCAACGAGATCTAATCAATACTTTGT
CGGAAGCAAAGAGTCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCCTCAAATTCACCAACT
TCTTTGAATTGGAAAACTACTTCCAATAACACTCTTGAGCTCAAAAATATAGCTGCTGATGGTACGCAAAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGAGTGGTAAGTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885