Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JTI59_RS02555 Genome accession   NZ_CP070511
Coordinates   498076..498570 (+) Length   164 a.a.
NCBI ID   WP_062754533.1    Uniprot ID   A0A6G9J298
Organism   Parageobacillus toebii strain NEB718     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 493076..503570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTI59_RS02525 (JTI59_02525) yyaC 493689..494312 (-) 624 WP_041269771.1 spore protease YyaC -
  JTI59_RS02530 (JTI59_02530) - 494461..495360 (+) 900 WP_205424262.1 mechanosensitive ion channel family protein -
  JTI59_RS02535 (JTI59_02535) - 495383..495580 (+) 198 WP_015865414.1 DUF951 domain-containing protein -
  JTI59_RS02540 (JTI59_02540) - 495732..496469 (+) 738 Protein_454 molybdopterin dinucleotide binding domain-containing protein -
  JTI59_RS02545 (JTI59_02545) ychF 496554..497654 (+) 1101 WP_205424263.1 redox-regulated ATPase YchF -
  JTI59_RS02550 (JTI59_02550) rpsF 497759..498046 (+) 288 WP_015865412.1 30S ribosomal protein S6 -
  JTI59_RS02555 (JTI59_02555) ssbA 498076..498570 (+) 495 WP_062754533.1 single-stranded DNA-binding protein Machinery gene
  JTI59_RS02560 (JTI59_02560) rpsR 498625..498864 (+) 240 WP_003253854.1 30S ribosomal protein S18 -
  JTI59_RS02565 (JTI59_02565) - 498959..499885 (+) 927 WP_205424264.1 YybS family protein -
  JTI59_RS02570 (JTI59_02570) - 499933..501909 (+) 1977 WP_081189414.1 DHH family phosphoesterase -
  JTI59_RS02575 (JTI59_02575) rplI 501906..502355 (+) 450 WP_062679393.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18357.27 Da        Isoelectric Point: 4.6052

>NTDB_id=540397 JTI59_RS02555 WP_062754533.1 498076..498570(+) (ssbA) [Parageobacillus toebii strain NEB718]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSAEQRGVAAGGYYGEPFPFGPDQNHRNPNEKDFSRIDEDPFANDGQTIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=540397 JTI59_RS02555 WP_062754533.1 498076..498570(+) (ssbA) [Parageobacillus toebii strain NEB718]
ATGATTAATCGCGTAATTCTTGTAGGAAGGTTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
CACGTTTACGCTTGCTGTCAATCGTCCGTTTACAAACCAGCAAGGTGAACGTGAAGCGGATTTTATTAACTGCGTTGTTT
GGCGTCGTCAAGCCGAAAATGTCGCGAATTTCTTAAAAAAGGGAAGTTTAGCCGGAGTAGACGGTCGTTTACAAACCCGC
AGCTATGAAGGTCAAGATGGAAGACGTGTATATGTGACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAGCCGAAAAG
TAGCGCAGAACAGCGTGGAGTGGCAGCAGGCGGCTACTATGGGGAGCCATTCCCATTTGGACCAGATCAGAACCATCGCA
ATCCAAACGAAAAAGATTTTAGTCGCATAGATGAAGATCCTTTTGCAAACGATGGTCAAACGATCGATATTTCGGATGAT
GACCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9J298

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Glaesserella parasuis strain SC1401

33.702

100

0.372
  ssb Vibrio cholerae strain A1552

33.708

100

0.366