Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   JWV26_RS20270 Genome accession   NZ_CP070505
Coordinates   4384366..4384689 (+) Length   107 a.a.
NCBI ID   WP_206419237.1    Uniprot ID   -
Organism   Ectopseudomonas toyotomiensis strain SM2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4379366..4389689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWV26_RS20250 (JWV26_20250) - 4379702..4380664 (+) 963 WP_206417669.1 UDP-glucose 4-epimerase family protein -
  JWV26_RS20255 (JWV26_20255) - 4380661..4381677 (+) 1017 WP_206417670.1 MraY family glycosyltransferase -
  JWV26_RS20260 (JWV26_20260) - 4381674..4382261 (+) 588 WP_206417671.1 acetyltransferase -
  JWV26_RS20265 (JWV26_20265) - 4382271..4384271 (+) 2001 WP_206417672.1 polysaccharide biosynthesis protein -
  JWV26_RS20270 (JWV26_20270) comEA/comE1 4384366..4384689 (+) 324 WP_206419237.1 ComEA family DNA-binding protein Machinery gene
  JWV26_RS20280 (JWV26_20280) - 4385410..4386606 (-) 1197 WP_143497276.1 amino acid aminotransferase -
  JWV26_RS20285 (JWV26_20285) uvrB 4386852..4388867 (+) 2016 WP_206417673.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11250.86 Da        Isoelectric Point: 5.8395

>NTDB_id=540338 JWV26_RS20270 WP_206419237.1 4384366..4384689(+) (comEA/comE1) [Ectopseudomonas toyotomiensis strain SM2]
MQKLRLSSLLFAVLASFSLAAVAAETPKTESAKPTAVQVAQVAVVNLNTADAATLQRELAGIGATKAQAIVAYREEHGNF
ASVDELLEVKGIGEATLEKNRDKLSVN

Nucleotide


Download         Length: 324 bp        

>NTDB_id=540338 JWV26_RS20270 WP_206419237.1 4384366..4384689(+) (comEA/comE1) [Ectopseudomonas toyotomiensis strain SM2]
ATGCAAAAACTCCGTCTATCTTCCCTGCTGTTCGCTGTTCTCGCTTCTTTCTCTCTGGCTGCAGTCGCAGCTGAAACCCC
GAAAACCGAAAGCGCCAAACCGACTGCCGTGCAGGTGGCGCAGGTTGCCGTGGTCAATCTGAATACCGCCGATGCTGCAA
CGCTGCAGCGTGAGCTGGCCGGGATTGGTGCGACCAAGGCGCAGGCGATTGTGGCTTATCGGGAGGAACACGGTAATTTC
GCCTCGGTCGACGAGTTGTTGGAGGTGAAAGGTATCGGCGAGGCGACGCTGGAGAAGAATCGCGACAAGCTGAGTGTTAA
TTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.182

100

0.495
  comEA Legionella pneumophila str. Paris

43.434

92.523

0.402
  comEA Legionella pneumophila strain ERS1305867

43.434

92.523

0.402
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

90.654

0.393
  comEA Vibrio campbellii strain DS40M4

43.299

90.654

0.393
  comEA Acinetobacter baylyi ADP1

52

70.093

0.364