Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JWZ98_RS01315 Genome accession   NZ_CP070494
Coordinates   287706..289214 (+) Length   502 a.a.
NCBI ID   WP_205452722.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 282706..294214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ98_RS01285 (JWZ98_01285) dapF 283077..283907 (+) 831 WP_346015186.1 diaminopimelate epimerase -
  JWZ98_RS01290 (JWZ98_01290) - 283904..284593 (+) 690 WP_205452714.1 DUF484 family protein -
  JWZ98_RS01295 (JWZ98_01295) xerC 284599..285492 (+) 894 WP_205452718.1 tyrosine recombinase XerC -
  JWZ98_RS01300 (JWZ98_01300) - 285537..286712 (-) 1176 WP_205452720.1 integrase -
  JWZ98_RS01305 (JWZ98_01305) - 286858..287442 (+) 585 WP_205452721.1 MarR family winged helix-turn-helix transcriptional regulator -
  JWZ98_RS01310 (JWZ98_01310) - 287448..287699 (+) 252 WP_033158177.1 accessory factor UbiK family protein -
  JWZ98_RS01315 (JWZ98_01315) comM 287706..289214 (+) 1509 WP_205452722.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JWZ98_RS01320 (JWZ98_01320) - 289234..290517 (-) 1284 WP_205452723.1 TolC family protein -
  JWZ98_RS01325 (JWZ98_01325) - 290514..293621 (-) 3108 WP_205452724.1 CusA/CzcA family heavy metal efflux RND transporter -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54151.11 Da        Isoelectric Point: 7.9313

>NTDB_id=540193 JWZ98_RS01315 WP_205452722.1 287706..289214(+) (comM) [Methylomonas sp. EFPC1]
MSLAVVYSRGRSGIDAPQVTVEVHVSSGLPALNIVGLPETAVKESKDRVRGAIINSHFEFPFQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPKDALHEYECIGELSLGGELRPIPGALPVAIHCRNAFRQLILPAGCAAEASLIKDAQLLPARTL
LEVCAHLAGRQAIAPPDVHLSFEQAVHTVDFADVHGQFHVKRAMEIAAAGKHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAALASISDHGLDVSRWRQPPYRAPHHTASAAALVGGGSNPKPGEISLSHNGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPASFQLIAAMNPCPCGYLGDASGRCRCTSEQVARYRARVSGPLLDRIDMHMEVPRVALEVLRKGS
AAGEETSETIRQRVVAARDFAYRRQGKANAALNAAEVKGICTLSEAGHQLLEQALEKFGLSHRAYHRILKLARTIADLAN
SKNIEISHLSEAIGYRKLDRTR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=540193 JWZ98_RS01315 WP_205452722.1 287706..289214(+) (comM) [Methylomonas sp. EFPC1]
ATGTCGCTGGCCGTCGTTTACAGCCGGGGCCGCTCCGGCATAGACGCCCCGCAAGTGACGGTGGAAGTGCATGTCAGTAG
CGGCTTGCCGGCTCTAAACATAGTCGGCTTGCCCGAAACGGCGGTAAAAGAAAGCAAGGACAGGGTGCGCGGGGCGATCA
TTAATTCGCACTTCGAATTTCCATTTCAGCGCATCACTATCAACTTGGCGCCCGCCGATTTGCCAAAGGAAGGCGGCCGC
TTTGATTTGGCGATTGCCTTGGGCATCCTGGCCGCCTCCGGGCAAATCCCCAAGGATGCCTTGCACGAGTACGAATGCAT
CGGCGAGTTATCGCTAGGTGGTGAGTTGCGGCCGATTCCCGGCGCGTTGCCGGTAGCGATTCATTGCCGCAATGCTTTTA
GGCAACTGATTCTGCCTGCTGGTTGCGCGGCGGAGGCGTCGTTGATCAAAGATGCGCAACTGCTGCCGGCCAGGACACTG
CTGGAAGTCTGTGCCCACTTGGCCGGCCGGCAAGCCATCGCGCCACCTGACGTTCATCTCAGCTTCGAGCAAGCGGTTCA
CACGGTCGATTTTGCCGACGTGCACGGCCAATTTCACGTCAAACGGGCCATGGAAATCGCCGCAGCCGGGAAGCATAATT
TACTGATGCTGGGCCCGCCCGGCACCGGCAAATCGATGTTGGCGGCACGTTTGCCGACCATTCTACCGGAGCTCAGCGAG
CAGCAAGCCCAGGAAACCGCCGCGCTGGCCTCGATCAGCGACCACGGCCTGGACGTCAGCCGTTGGCGGCAGCCGCCCTA
TAGAGCGCCGCACCATACCGCCTCAGCTGCGGCCTTGGTTGGCGGTGGTAGCAACCCAAAACCTGGCGAAATATCCTTGT
CGCACAACGGTGCGCTATTTTTGGACGAACTGCCGGAGTTCGATAGAAAGGTCCTGGAAGTGCTGCGCGAACCCTTGGAA
ACCGGCCATATCACGATTTCGCGTGCCAACCGCCAAGCCGATTTTCCGGCCAGTTTTCAGTTGATCGCGGCGATGAATCC
GTGTCCCTGCGGCTATTTAGGCGATGCTTCCGGCCGTTGCCGCTGCACCTCCGAACAAGTGGCCCGCTATCGCGCTAGGG
TCTCCGGGCCTTTGCTGGACAGGATAGACATGCATATGGAAGTGCCGCGCGTTGCGCTGGAGGTACTGAGGAAAGGCTCG
GCGGCGGGTGAAGAAACCAGCGAAACGATTCGGCAGCGCGTCGTCGCAGCCCGCGACTTTGCTTACCGCCGCCAAGGCAA
AGCCAATGCTGCGTTAAACGCCGCCGAGGTGAAGGGTATCTGCACCTTGTCCGAAGCCGGTCATCAGTTGTTGGAACAAG
CGCTGGAAAAATTCGGCCTGTCGCACCGGGCTTACCACCGTATTTTGAAACTGGCGCGCACGATTGCCGATCTGGCGAAT
TCAAAGAATATCGAAATCTCCCACCTCAGCGAAGCCATCGGCTATCGCAAGCTAGATAGAACCCGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

99.602

0.54
  comM Glaesserella parasuis strain SC1401

53.663

100

0.54
  comM Vibrio campbellii strain DS40M4

53.8

99.602

0.536
  comM Haemophilus influenzae Rd KW20

51.976

100

0.524
  comM Legionella pneumophila str. Paris

51.497

99.801

0.514
  comM Legionella pneumophila strain ERS1305867

51.497

99.801

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.771

100

0.476