Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JWZ97_RS04925 Genome accession   NZ_CP070491
Coordinates   1129201..1130721 (+) Length   506 a.a.
NCBI ID   WP_205433699.1    Uniprot ID   A0A974ZQA5
Organism   Methylococcus sp. EFPC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1124201..1135721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS04900 (JWZ97_04900) - 1124296..1126230 (-) 1935 WP_205433694.1 M2 family metallopeptidase -
  JWZ97_RS04905 (JWZ97_04905) - 1126529..1126909 (+) 381 WP_205433695.1 hypothetical protein -
  JWZ97_RS04910 (JWZ97_04910) - 1126962..1128320 (-) 1359 WP_305799117.1 ammonium transporter -
  JWZ97_RS04915 (JWZ97_04915) glnK 1128364..1128702 (-) 339 WP_205433697.1 P-II family nitrogen regulator -
  JWZ97_RS04920 (JWZ97_04920) - 1128928..1129179 (+) 252 WP_205433698.1 accessory factor UbiK family protein -
  JWZ97_RS04925 (JWZ97_04925) comM 1129201..1130721 (+) 1521 WP_205433699.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JWZ97_RS04930 (JWZ97_04930) - 1131069..1134494 (+) 3426 WP_205433700.1 FecR domain-containing protein -
  JWZ97_RS04935 (JWZ97_04935) - 1134544..1135335 (+) 792 WP_205433701.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54400.51 Da        Isoelectric Point: 7.5263

>NTDB_id=540173 JWZ97_RS04925 WP_205433699.1 1129201..1130721(+) (comM) [Methylococcus sp. EFPC2]
MTLAVVYSRARQGIDAPLVTVEVHISNGLPALSIVGLPETAVKESKDRVRGALLNCQFEFPAQRITVNLAPADLPKEGGR
FDLAVALGILAASGQLSPKSLESVEVLGELSLGGEIRPVTGALPVAMQAREAGRGLILPRANAGEARLVEGTEIIPAGHL
LEICAHLNGQKAIVFEPDTSGFDSPTSVELPDFADVHGHYQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRLPGILPPL
TDQEALERAAVTSVSDLSFDPRLFRQPPFRSPHHSASAPALVGGGGNPRPGEVSLAHHGVLFLDELPEFDRKVLEVLREP
LETGVITISRAARQADFPARFQLIAAMNPCPCGYLGDASGRCHCTSEQVQRYRARISGPLLDRIDMHLEVPRVSQEMLRD
GTPGGEESSEMIRARVVEARSRALARTGRANAWLTPPLIKQYCRLDDGCQRVLEQAVSKLGLSHRAYHRILKVARTIADL
AGAEAIALPHLSEAIAYRRLDRAPVR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=540173 JWZ97_RS04925 WP_205433699.1 1129201..1130721(+) (comM) [Methylococcus sp. EFPC2]
ATGACGCTCGCGGTCGTTTACAGCCGGGCCCGGCAAGGCATCGATGCCCCGCTGGTGACGGTGGAAGTGCACATCAGCAA
CGGGCTACCGGCCCTCTCCATCGTTGGCTTGCCTGAAACGGCGGTGAAGGAAAGCAAGGACCGCGTACGGGGTGCATTGC
TCAACTGCCAATTCGAATTTCCAGCCCAGCGCATCACCGTCAATCTGGCGCCGGCGGATCTGCCCAAGGAGGGCGGGCGT
TTCGACCTGGCCGTCGCCCTCGGCATACTCGCCGCTTCGGGACAGCTCAGCCCAAAATCCCTGGAGTCGGTCGAAGTGCT
CGGCGAATTGTCGCTGGGTGGTGAAATCCGACCCGTCACCGGTGCCCTGCCGGTTGCCATGCAGGCGCGTGAGGCCGGCC
GCGGTTTGATTCTGCCCCGCGCCAATGCGGGGGAGGCGAGACTCGTCGAGGGCACGGAGATTATTCCCGCGGGCCATCTG
CTGGAAATCTGCGCTCATCTCAATGGCCAGAAGGCCATCGTTTTCGAGCCCGACACGTCCGGTTTCGATTCCCCCACTTC
GGTAGAACTGCCCGATTTCGCCGACGTCCATGGCCATTATCAGGCCAAGCGCGCGCTGGAAATTGCCGCCGCCGGACGCC
ATAACCTCCTCATGCTGGGCCCGCCGGGGACCGGCAAATCCATGCTCGCCTCGCGCCTGCCCGGCATACTTCCTCCACTG
ACCGACCAGGAGGCTTTGGAGCGCGCGGCCGTGACTTCCGTCAGCGATCTGAGTTTCGACCCCCGATTGTTCCGGCAACC
GCCGTTTCGCTCGCCGCACCATTCCGCATCGGCGCCGGCTTTGGTCGGAGGTGGAGGCAATCCACGCCCCGGCGAGGTTT
CGCTGGCCCACCATGGCGTGCTGTTTCTGGACGAATTGCCGGAATTCGACCGCAAGGTGCTCGAAGTCTTGCGGGAGCCG
CTGGAAACCGGCGTCATCACCATCTCCCGTGCCGCCCGCCAGGCGGATTTCCCCGCCCGCTTCCAGTTGATCGCGGCGAT
GAATCCCTGTCCCTGCGGTTATCTGGGCGACGCTTCGGGTCGCTGCCATTGCACGTCCGAACAGGTGCAGCGCTATCGGG
CCCGGATTTCGGGGCCCTTGCTGGATCGTATCGACATGCATCTCGAAGTGCCGCGGGTTTCCCAGGAAATGCTGCGCGAC
GGCACGCCGGGCGGAGAGGAGTCCAGCGAAATGATACGTGCCCGTGTCGTCGAGGCGCGCAGCCGGGCCTTGGCACGAAC
CGGCCGCGCCAACGCTTGGCTGACGCCGCCGCTGATCAAGCAATATTGCCGGCTGGACGACGGTTGCCAGCGCGTTCTGG
AGCAGGCCGTGAGCAAGCTTGGTCTTTCACACCGCGCCTACCACCGCATACTCAAAGTCGCCCGTACCATTGCCGACCTG
GCCGGCGCCGAGGCGATAGCGCTGCCCCACTTGAGCGAGGCCATCGCCTATCGGCGCCTGGACCGGGCGCCCGTCCGATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.929

100

0.559
  comM Glaesserella parasuis strain SC1401

54.348

100

0.543
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Haemophilus influenzae Rd KW20

53.057

100

0.532
  comM Legionella pneumophila str. Paris

49.499

98.617

0.488
  comM Legionella pneumophila strain ERS1305867

49.499

98.617

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.863

100

0.472