Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BN117_RS09890 Genome accession   NC_018828
Coordinates   2101548..2103050 (+) Length   500 a.a.
NCBI ID   WP_015039592.1    Uniprot ID   K0MGS9
Organism   Bordetella parapertussis Bpp5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2096548..2108050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN117_RS09860 (BN117_1911) - 2096805..2097407 (+) 603 WP_015039589.1 TetR/AcrR family transcriptional regulator -
  BN117_RS09865 (BN117_1912) - 2097468..2098421 (-) 954 WP_015039590.1 ISL3 family transposase -
  BN117_RS24505 - 2098681..2098809 (+) 129 Protein_1959 autotransporter outer membrane beta-barrel domain-containing protein -
  BN117_RS09875 (BN117_1913) amt 2098863..2100101 (-) 1239 WP_015039591.1 ammonium transporter -
  BN117_RS09880 (BN117_1914) - 2100127..2100465 (-) 339 WP_003812839.1 P-II family nitrogen regulator -
  BN117_RS09885 (BN117_1915) - 2101175..2101441 (+) 267 WP_041937222.1 accessory factor UbiK family protein -
  BN117_RS09890 (BN117_1916) comM 2101548..2103050 (+) 1503 WP_015039592.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BN117_RS09895 (BN117_1917) rpmI 2103373..2103570 (+) 198 WP_003812834.1 50S ribosomal protein L35 -
  BN117_RS09900 (BN117_1918) rplT 2103586..2103945 (+) 360 WP_003812832.1 50S ribosomal protein L20 -
  BN117_RS09905 (BN117_1919) pheS 2104020..2105042 (+) 1023 WP_164926523.1 phenylalanine--tRNA ligase subunit alpha -
  BN117_RS09910 (BN117_1920) pheT 2105055..2107472 (+) 2418 WP_015039594.1 phenylalanine--tRNA ligase subunit beta -
  BN117_RS09915 (BN117_1921) - 2107478..2107819 (+) 342 WP_003812826.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52219.27 Da        Isoelectric Point: 8.8352

>NTDB_id=54016 BN117_RS09890 WP_015039592.1 2101548..2103050(+) (comM) [Bordetella parapertussis Bpp5]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGAPVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEVEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPT

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=54016 BN117_RS09890 WP_015039592.1 2101548..2103050(+) (comM) [Bordetella parapertussis Bpp5]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
TGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCAATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCTGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGATTGCGTGTGGGCGGCCGAACTGTCGCTGTCGGGCGCCCCGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGTGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCAGCCGAGCGCCGCAG
CTGGCCCGAGGTCGAGCCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAAGTGGCGGCCATCGCGGGCGCCGGCGGAGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTTCGGGCCCCCCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCTCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAATCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTTCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAGTTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCACGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0MGS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.105

100

0.494
  comM Vibrio campbellii strain DS40M4

48.008

100

0.482
  comM Legionella pneumophila strain ERS1305867

45.117

100

0.462
  comM Legionella pneumophila str. Paris

45.117

100

0.462
  comM Haemophilus influenzae Rd KW20

45.365

100

0.46
  comM Glaesserella parasuis strain SC1401

44.685

100

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.961

100

0.428

Multiple sequence alignment