Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JQX68_RS18110 Genome accession   NZ_CP070483
Coordinates   3557104..3557826 (-) Length   240 a.a.
NCBI ID   WP_147772593.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3552104..3562826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS18075 (JQX68_18075) fliW 3552244..3552675 (-) 432 WP_040081668.1 flagellar assembly protein FliW -
  JQX68_RS18080 (JQX68_18080) - 3552696..3553271 (-) 576 WP_124059230.1 DUF6470 family protein -
  JQX68_RS18085 (JQX68_18085) flgL 3553318..3554214 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  JQX68_RS18090 (JQX68_18090) flgK 3554225..3555748 (-) 1524 WP_069838610.1 flagellar hook-associated protein FlgK -
  JQX68_RS18095 (JQX68_18095) flgN 3555767..3556249 (-) 483 WP_147772592.1 flagellar protein FlgN -
  JQX68_RS18100 (JQX68_18100) flgM 3556264..3556530 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  JQX68_RS18105 (JQX68_18105) - 3556611..3557030 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  JQX68_RS18110 (JQX68_18110) comFC 3557104..3557826 (-) 723 WP_147772593.1 ComF family protein Machinery gene
  JQX68_RS18115 (JQX68_18115) comFB 3557790..3558086 (-) 297 WP_014665560.1 late competence protein ComFB -
  JQX68_RS18120 (JQX68_18120) comFA 3558155..3559537 (-) 1383 WP_147772594.1 ATP-dependent helicase ComFA Machinery gene
  JQX68_RS18125 (JQX68_18125) - 3559644..3560489 (-) 846 WP_014665562.1 DegV family protein -
  JQX68_RS18130 (JQX68_18130) degU 3560587..3561276 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JQX68_RS18135 (JQX68_18135) degS 3561359..3562516 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27211.71 Da        Isoelectric Point: 9.6435

>NTDB_id=540042 JQX68_RS18110 WP_147772593.1 3557104..3557826(-) (comFC) [Bacillus sp. LJBS06]
MPNKAGGGIHKLICLLCDSQFSQAVTWRALFLLKPDEKVCHSCRSKLKKITGPICTICGRPQSVYAVCRDCEAWKLRISH
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPIHHPLIRLNNEKQSKKKKTERLLSACIFDTKNNSAEGMNIILIDDLYTTGATLHFAAHCLLEKGKAASVTSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=540042 JQX68_RS18110 WP_147772593.1 3557104..3557826(-) (comFC) [Bacillus sp. LJBS06]
ATGCCAAACAAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTGCTATGCGATTCGCAATTTTCTCAAGCTGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGCAGAAGTAAATTGAAAAAAATTACAGGTCCTA
TCTGCACCATATGCGGCAGACCTCAATCCGTTTATGCGGTATGCAGGGATTGTGAGGCGTGGAAATTAAGGATTAGTCAC
AGCTTGCTGCTCCGCCAAAATCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGCGATTTTTCTTCAACCTTTTCAAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTAAGCAAGGAACGGGAAGAGGAGCGCGGATTTAATCAGGCGCAGCTCCTGGCAGAATGTTTA
GGCAGGCCCATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
CGCGTGTATTTTTGATACGAAAAACAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACTGGCG
CCACTTTGCATTTTGCAGCGCACTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGACATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

92.083

100

0.921