Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JQX68_RS18130 Genome accession   NZ_CP070483
Coordinates   3560587..3561276 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. LJBS06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3555587..3566276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS18095 (JQX68_18095) flgN 3555767..3556249 (-) 483 WP_147772592.1 flagellar protein FlgN -
  JQX68_RS18100 (JQX68_18100) flgM 3556264..3556530 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  JQX68_RS18105 (JQX68_18105) - 3556611..3557030 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  JQX68_RS18110 (JQX68_18110) comFC 3557104..3557826 (-) 723 WP_147772593.1 ComF family protein Machinery gene
  JQX68_RS18115 (JQX68_18115) comFB 3557790..3558086 (-) 297 WP_014665560.1 late competence protein ComFB -
  JQX68_RS18120 (JQX68_18120) comFA 3558155..3559537 (-) 1383 WP_147772594.1 ATP-dependent helicase ComFA Machinery gene
  JQX68_RS18125 (JQX68_18125) - 3559644..3560489 (-) 846 WP_014665562.1 DegV family protein -
  JQX68_RS18130 (JQX68_18130) degU 3560587..3561276 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JQX68_RS18135 (JQX68_18135) degS 3561359..3562516 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JQX68_RS18140 (JQX68_18140) - 3562733..3563386 (+) 654 WP_014665564.1 YigZ family protein -
  JQX68_RS18145 (JQX68_18145) tagV 3563386..3564561 (+) 1176 WP_040081662.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  JQX68_RS18150 (JQX68_18150) - 3564633..3565709 (-) 1077 WP_014665566.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=540044 JQX68_RS18130 WP_003219701.1 3560587..3561276(-) (degU) [Bacillus sp. LJBS06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=540044 JQX68_RS18130 WP_003219701.1 3560587..3561276(-) (degU) [Bacillus sp. LJBS06]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCTAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1