Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JQX68_RS18120 Genome accession   NZ_CP070483
Coordinates   3558155..3559537 (-) Length   460 a.a.
NCBI ID   WP_147772594.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3553155..3564537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS18085 (JQX68_18085) flgL 3553318..3554214 (-) 897 WP_040081667.1 flagellar hook-associated protein FlgL -
  JQX68_RS18090 (JQX68_18090) flgK 3554225..3555748 (-) 1524 WP_069838610.1 flagellar hook-associated protein FlgK -
  JQX68_RS18095 (JQX68_18095) flgN 3555767..3556249 (-) 483 WP_147772592.1 flagellar protein FlgN -
  JQX68_RS18100 (JQX68_18100) flgM 3556264..3556530 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  JQX68_RS18105 (JQX68_18105) - 3556611..3557030 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  JQX68_RS18110 (JQX68_18110) comFC 3557104..3557826 (-) 723 WP_147772593.1 ComF family protein Machinery gene
  JQX68_RS18115 (JQX68_18115) comFB 3557790..3558086 (-) 297 WP_014665560.1 late competence protein ComFB -
  JQX68_RS18120 (JQX68_18120) comFA 3558155..3559537 (-) 1383 WP_147772594.1 ATP-dependent helicase ComFA Machinery gene
  JQX68_RS18125 (JQX68_18125) - 3559644..3560489 (-) 846 WP_014665562.1 DegV family protein -
  JQX68_RS18130 (JQX68_18130) degU 3560587..3561276 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JQX68_RS18135 (JQX68_18135) degS 3561359..3562516 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JQX68_RS18140 (JQX68_18140) - 3562733..3563386 (+) 654 WP_014665564.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52285.40 Da        Isoelectric Point: 10.1749

>NTDB_id=540043 JQX68_RS18120 WP_147772594.1 3558155..3559537(-) (comFA) [Bacillus sp. LJBS06]
MKVPTEKNISFSRELQQTLQSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDKRYFSFYHPFGKD
QLYCRSCIMMGRVSEEVPLYSWKEGDEQNWKSVKLTWGGKLSSGQQKAANILIEAISKREELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGVSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKAQNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAASFKDVNCRTATVHAEDKHRKEKVQRFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALIQIAGRTGRHKEYADGDVIFFHFGKTKSMLDAKKHIKEMNGLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=540043 JQX68_RS18120 WP_147772594.1 3558155..3559537(-) (comFA) [Bacillus sp. LJBS06]
GTGAAGGTGCCAACTGAAAAGAACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGGAC
TGAACTCCCATTTTCCGATGAAATGATTGAATGGCATATCAAGAATGGCTATATCACCGCTGAAAATTCTATATCAATAA
ATAAACGGGGCTATAGATGTAATAGGTGCGGCCAAACTGATAAGCGGTATTTTTCTTTTTATCACCCATTTGGAAAAGAT
CAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGGAGATGA
ACAAAACTGGAAGTCTGTTAAGCTGACATGGGGCGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATATTTTAATTG
AAGCAATATCAAAAAGAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACTCCTCGCACAGATGTTGTATTAGAGCTTGCCCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGTAAGCGATGACAAAGGGCGGCTATCTCCGCTCATGA
TTTCCACCACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTTATGATCGTTGATGAGGTTGACGCTTTTCCGTAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCGCAGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCCTCCGTTTCTATTCTAGAAAAGGCTGCTGC
GAGCTTTAAAGATGTTAATTGCCGAACCGCGACTGTGCATGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCGATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTTACGGTTCCCAAGGTGCAAACAGGTGTA
CTAGGAGCGGAATCTCCTATCTTTACGGAAAGCGCACTTATTCAAATCGCAGGAAGAACTGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTTGGCAAAACAAAGAGTATGCTCGATGCAAAAAAGCATATAAAAGAAATGAACG
GCTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

92.391

100

0.924